CX287366

Overview
NameCX287366
Unique NameCX287366
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length399
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig412 contig Ccv1_Contig412:100..498. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.437e-38
Identity = 76/133 (57.14%), Postives = 102/133 (76.69%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETWPQDPLLPQDPYERAMARFWAKFADEKLMQTAWKSTWTKGE-EKEDALKATKEVLEKIEGELKGKSYF 398
            SPFV RV  ALKLKGVE++++EE++ NKS  LL+ NPVHKKVPV VH+++ I ESLVI+EYIDETW  +P+LP DPY+RA+ARFW+KF D+K++    KS +T  E E+E  ++ T E L+ +E ELK K +F
Sbjct:   16 SPFVCRVQIALKLKGVEYKFLEENLGNKSDLLLKYNPVHKKVPVFVHNEQPIAESLVIVEYIDETWKNNPILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENELKDKKFF 148          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTX3_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.852e-37
Identity = 75/132 (56.82%), Postives = 99/132 (75.00%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETWPQDPLLPQDPYERAMARFWAKFADEKLMQTAWKSTWTKGEEKEDALKATKEVLEKIEGELKGKSYF 398
            SPF  RV WALKLKGV++EYIEED  NKS+ LL+ NPVHKKVPVL+H+ K IVES+VILEYIDET+    +LP+DPY+RA+ARFW+KF  +K+      + + KGEE+E   +   E+L+ ++ ELK K +F
Sbjct:   12 SPFTHRVEWALKLKGVKYEYIEEDRDNKSSLLLQSNPVHKKVPVLIHNGKPIVESMVILEYIDETFEGPSILPKDPYDRALARFWSKFLGDKVAAVV-NTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFF 142          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTX1_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.852e-37
Identity = 76/132 (57.58%), Postives = 100/132 (75.76%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETWPQDPLLPQDPYERAMARFWAKFADEKLMQTAWKSTWTKGEEKEDALKATKEVLEKIEGELKGKSYF 398
            SPF  RV WALK+KGV++EYIEED  NKS+ LL+ NP+HKKVPVL+H+ K IVES+VILEYIDET+    +LP+DPY+RA+ARFWAKF D+K+     K+   KGEE+E   +   E+L+ ++ ELK K +F
Sbjct:   12 SPFSRRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPIHKKVPVLIHNGKRIVESMVILEYIDETFEGPSILPKDPYDRALARFWAKFLDDKVPAVV-KTFLRKGEEQEKDKEEVCEMLKVLDNELKDKKFF 142          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.852e-37
Identity = 72/132 (54.55%), Postives = 99/132 (75.00%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETWPQDPLLPQDPYERAMARFWAKFADEKLMQTAWKSTWTKGEEKEDALKATKEVLEKIEGELKGKSYF 398
            SPF  RV WALK+KGV++E+IEED+ NKS  LL+ NP+HKK+PVL+H+ K I ES+VILEYIDE +    +LP+DPY+RA+ARFWAK+ ++K     WKS ++KGEE+E A +   E+L+ ++ E K K  F
Sbjct:   12 SPFSHRVEWALKIKGVKYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEAFEGPSILPKDPYDRALARFWAKYVEDK-GAAVWKSFFSKGEEQEKAKEEAYEMLKILDNEFKDKKCF 142          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTX2_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.025e-36
Identity = 74/132 (56.06%), Postives = 100/132 (75.76%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETWPQDPLLPQDPYERAMARFWAKFADEKLMQTAWKSTWTKGEEKEDALKATKEVLEKIEGELKGKSYF 398
            SPF  RV WALK+KGV++EYIEED  NKS+ LL+ NPV+KKVPVL+H+ K IVES++ILEYIDET+    +LP+DPY+RA+ARFWAKF D+K+      + + KGEE+E   +   E+L+ ++ ELK K +F
Sbjct:   12 SPFSHRVEWALKIKGVKYEYIEEDRDNKSSLLLQSNPVYKKVPVLIHNGKPIVESMIILEYIDETFEGPSILPKDPYDRALARFWAKFLDDKVAAVV-NTFFRKGEEQEKGKEEVYEMLKVLDNELKDKKFF 142          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.984e-36
Identity = 76/133 (57.14%), Postives = 97/133 (72.93%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETWPQDPLLPQDPYERAMARFWAKFADEKLMQTAWKSTWTKGEEKEDAL-KATKEVLEKIEGELKGKSYF 398
            SPF  RV  ALKLKG+ +EY+EE + NKS  LL LNP+HKKVPVLVH+ K I+ES VILEYIDETWPQ+P+LPQDPYER+ ARF+AK  DE++M   + S     E+  + L +  +E++  +E EL GK YF
Sbjct:   15 SPFSRRVEMALKLKGIPYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETWPQNPILPQDPYERSKARFFAKLVDEQIMNVGFISMARADEKGREVLAEQVRELIMYLEKELVGKDYF 147          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 4.032e-33
Identity = 70/133 (52.63%), Postives = 95/133 (71.43%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETW-PQDPLLPQDPYERAMARFWAKFADEKLMQTAWKSTWTKGEEKEDALKATKEVLEKIEGELKGKSYF 398
            S F  R+  AL LKG+++E  EE++ +KS  LLE+NPVHKK+P+L+H+ K I ESL ILEYIDE W  + PLLP DPYER+ ARFWA + D+K+  T  +    KGE++E+A K   E+L+ +EGEL  K+YF
Sbjct:   14 SSFGMRLRIALALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNSKAICESLNILEYIDEVWHDKCPLLPSDPYERSQARFWADYIDKKIYSTGRRVWSGKGEDQEEAKKEFIEILKTLEGELGNKTYF 146          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTX1_NICPL (Probable glutathione S-transferase MSR-1 OS=Nicotiana plumbaginifolia GN=MSR-1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.414e-32
Identity = 68/133 (51.13%), Postives = 93/133 (69.92%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETWPQD-PLLPQDPYERAMARFWAKFADEKLMQTAWKSTWTKGEEKEDALKATKEVLEKIEGELKGKSYF 398
            S F  R+  AL LKG+++E  EE++ +KS  LLE+NPVHKK+P+L+H+ K I ESL ILEYIDE W +  PLLP DPY+R+ ARFWA + D K+  T  +    KGE++E+A K   E+ + +EGEL  K+YF
Sbjct:   14 SSFGMRLRIALALKGIKYEAKEENLSDKSPLLLEMNPVHKKIPILIHNGKPICESLNILEYIDEVWHEKCPLLPSDPYQRSQARFWANYIDNKIYSTGRRVWSGKGEDQEEAKKEFIEIFKTLEGELGNKTYF 146          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.214e-29
Identity = 67/134 (50.00%), Postives = 88/134 (65.67%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETWPQDP--LLPQDPYERAMARFWAKFADEKLMQTAWKSTWTKGEEKEDALKATKEVLEKIEGELKGKSYF 398
            S F  R+  AL  K +++EY EED+ NKS  LL++NP+HKK+PVL+H+ K I ES++ +EYI+E W      LLP DPY+RA ARFWA + D+KL     K   TKGEE+E A K   E L+ +EG L  K YF
Sbjct:   14 SMFGMRLRIALAEKEIKYEYKEEDLRNKSPLLLQMNPIHKKIPVLIHNGKPICESIIAVEYIEEVWKDKAPNLLPSDPYDRAQARFWADYIDKKLYDFGRKLWTTKGEEQEAAKKDFIECLKVLEGALGDKPYF 147          
BLAST of CX287366 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.026e-29
Identity = 60/134 (44.78%), Postives = 89/134 (66.42%), Query Frame = 3
Query:    3 SPFVFRVVWALKLKGVEFEYIEEDIFNKSTRLLELNPVHKKVPVLVHDDKVIVESLVILEYIDETW-PQDPLLPQDPYERAMARFWAKFADEKLMQTAWKSTW-TKGEEKEDALKATKEVLEKIEGELKGKSYF 398
            S +  R   AL  KGV +EY EE++ N+S  LL++NP+HKK+PVL+H+ K I ES +I++YIDE W  + PL+P DPY+R+ ARFW  + D+K+  T WK  W +KGEE E+  K    + +++E  L  K ++
Sbjct:   13 SMYGMRARIALAEKGVRYEYKEENLMNRSPLLLQMNPIHKKIPVLIHNGKPICESAIIVQYIDEVWNDKSPLMPSDPYKRSQARFWVDYIDKKIYDT-WKKMWLSKGEEHEEGKKELISIFKQLEETLTDKPFY 145          
The following BLAST results are available for this feature:
BLAST of CX287366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GSTX6_SOYBN5.437e-3857.14Probable glutathione S-transferase OS=Glycine max ... [more]
GSTX3_TOBAC7.852e-3756.82Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_TOBAC7.852e-3757.58Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX1_SOLTU7.852e-3754.55Probable glutathione S-transferase OS=Solanum tube... [more]
GSTX2_TOBAC1.025e-3656.06Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTXA_ARATH2.984e-3657.14Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTXA_TOBAC4.032e-3352.63Probable glutathione S-transferase parA OS=Nicotia... [more]
GSTX1_NICPL3.414e-3251.13Probable glutathione S-transferase MSR-1 OS=Nicoti... [more]
GSTX4_TOBAC1.214e-2950.00Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX3_SOYBN6.026e-2944.78Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01008G07SK Veg1 Citrus clementina cDNA clone C01008G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287366 ID=CX287366; Name=CX287366; organism=Citrus clementina; type=EST; length=399bp
GTAGTCCTTTTGTGTTTAGGGTAGTATGGGCATTGAAGCTAAAGGGTGTT
GAATTTGAATACATTGAAGAAGACATCTTTAACAAAAGCACCAGGCTTCT
TGAGCTGAACCCAGTTCATAAAAAGGTTCCTGTGCTTGTTCATGATGACA
AAGTGATAGTTGAGTCGCTTGTTATTCTGGAGTACATCGATGAGACATGG
CCACAAGATCCGTTGCTGCCTCAAGATCCTTATGAAAGAGCCATGGCTCG
ATTTTGGGCTAAATTTGCAGATGAAAAGCTGATGCAAACTGCATGGAAGT
CAACGTGGACCAAAGGAGAGGAAAAAGAGGATGCTCTGAAAGCAACAAAG
GAAGTTTTGGAGAAGATAGAGGGAGAACTCAAAGGAAAAAGCTACTTTG
back to top