CX287371

Overview
NameCX287371
Unique NameCX287371
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length420
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287371 vs. ExPASy Swiss-Prot
Match: PRT1_ARATH (E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana GN=PRT1 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 6.471e-31
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 3 
Query:   69 DEFKCCVCLELLYKPVVLACGHISCFWCVYNAMNSWHESNCPVCRNPYNHFPSICXXXXXXXXXXYPLTYEKRERQVAEEEKQLGHFSPQV 341
            D+F CCVCLELLYKP+VL+CGH+SCFWCV+ +MN + ES+CP+CR+PY HFPS+C          YPL ++KRE QV +EE++   FSPQ+
Sbjct:   22 DQFLCCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPICRDPYVHFPSVCQKLYFLLKKMYPLAHKKREEQVLKEEQERECFSPQI 112
The following BLAST results are available for this feature:
BLAST of CX287371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRT1_ARATH6.471e-3158.24E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC01008G12SK Veg1 Citrus clementina cDNA clone C01008G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287371 ID=CX287371; Name=CX287371; organism=Citrus clementina; type=EST; length=420bp
TTCGGCACGAGGCCTTAATGGAAGCAGAAGAGCACGAAATTGAACTTGCG
GATAAGGAAGCATTCAGCGATGAGTTTAAATGCTGCGTTTGCTTGGAACT
CCTTTACAAGCCGGTAGTATTGGCCTGTGGCCACATTTCATGCTTCTGGT
GCGTATATAATGCCATGAATTCTTGGCACGAGTCTAACTGCCCAGTTTGT
CGTAACCCTTACAATCATTTTCCAAGTATTTGTCATTTGCTGCACTTCTT
GCTCAAGAAGCTGTATCCTTTGACCTATGAGAAAAGGGAAAGGCAAGTGG
CAGAAGAAGAGAAGCAACTCGGCCACTTCTCACCACAGGTTGGTTATAAT
TTATTTGGATCACCTACTAATAAGGAGGTTGATATCTTGGGCAAGTCTCT
AGATTCCCCCTCTCAACAGC
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