CX287378

Overview
NameCX287378
Unique NameCX287378
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length400
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287378 vs. ExPASy Swiss-Prot
Match: PSBP1_TOBAC (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.286e-35
Identity = 78/103 (75.73%), Postives = 91/103 (88.35%), Query Frame = 1
Query:  109 MASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAV-QKDDGSAV--SRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPY 399
            MASTQCFLH HALS++ ART+SS   QR+VS++KP Q+VCRAQKQ+  Q+DDG++V  SRRLALTVLIGAAA+GSKVSPADAAYGE+ANVFGKPK NTDFL Y
Sbjct:    1 MASTQCFLHQHALSSSAARTTSSVSSQRYVSSLKPNQLVCRAQKQSSPQEDDGNSVVVSRRLALTVLIGAAAIGSKVSPADAAYGEAANVFGKPKENTDFLAY 103          
BLAST of CX287378 vs. ExPASy Swiss-Prot
Match: PSBP1_ARATH (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 1.526e-32
Identity = 72/100 (72.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query:  109 MASTQCFLHHHALSTTPARTSSS---QRHVSNIKPTQIVCRAQKQAVQKDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPY 399
            MA + CFLH  AL+++ AR+SSS   QRHVS  KP QI+C+AQ+    +DD SAVSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDFLPY
Sbjct:    1 MAYSACFLHQSALASSAARSSSSSSSQRHVSLSKPVQIICKAQQS--HEDDNSAVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFLPY 98          
BLAST of CX287378 vs. ExPASy Swiss-Prot
Match: PSBP_CUCSA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.204e-31
Identity = 72/99 (72.73%), Postives = 82/99 (82.83%), Query Frame = 1
Query:  109 MASTQCFLHHHALSTTPARTSSSQRHVSNIK-PTQIVCRAQKQA-VQKDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPY 399
            MAST CFLHHHAL T  AR+SSS R  +  K P  +VCRAQKQ   Q+++G  VSRRLALTVLIGAAA+GSKVSPADAAYGE+ANVFGKPK+NTD+LPY
Sbjct:    1 MASTSCFLHHHAL-TAAARSSSSPRQAALPKSPQLLVCRAQKQQPAQEEEGGVVSRRLALTVLIGAAALGSKVSPADAAYGEAANVFGKPKSNTDYLPY 98          
BLAST of CX287378 vs. ExPASy Swiss-Prot
Match: PSBP2_TOBAC (Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 3.759e-31
Identity = 73/101 (72.28%), Postives = 83/101 (82.18%), Query Frame = 1
Query:  109 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQKDDGS---AVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPY 399
            MASTQCFLHHHALST PART   +  V ++KP Q+ VCRAQKQ+  ++D     +VSRRLALTVLIGAAAVGSKVSPADAAYGE+ANVFGKPKT+TDF  Y
Sbjct:    1 MASTQCFLHHHALST-PARTPLVRSIVPSLKPNQLLVCRAQKQSAPQEDNVNSVSVSRRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTY 100          
BLAST of CX287378 vs. ExPASy Swiss-Prot
Match: PSBP_SOLTU (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.413e-31
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 1
Query:  112 ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQKDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPY 399
            ASTQCFLH +HAL ++PARTSS    V + KP Q++CRAQKQ    +  +AVSRRLALT+LIG AA+GSKVSPADAAYGE+ANVFGKPK NTDFLPY
Sbjct:    3 ASTQCFLHQYHALRSSPARTSS----VPSPKPNQLICRAQKQDDANNTSNAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPY 95          
BLAST of CX287378 vs. ExPASy Swiss-Prot
Match: PSBP_SOLLC (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.094e-30
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 1
Query:  112 ASTQCFLH-HHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQKDDGS--AVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPY 399
            ASTQCFLH +HAL ++PARTSS    VS+ KP Q++CRAQKQ    DD S  AVSRRLALT+LIG AA+GSKVSPADAAYGE+ANVFGKPK NTDFLPY
Sbjct:    3 ASTQCFLHQYHALRSSPARTSS----VSSPKPNQLICRAQKQ----DDASNAAVSRRLALTLLIGTAAIGSKVSPADAAYGEAANVFGKPKENTDFLPY 93          
BLAST of CX287378 vs. ExPASy Swiss-Prot
Match: PSBP_SPIOL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.866e-30
Identity = 71/102 (69.61%), Postives = 84/102 (82.35%), Query Frame = 1
Query:  109 MASTQCFLHHHALSTTPA--RTSSSQRHVS-NIKPTQIVCRAQKQAVQKDD--GSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPY 399
            MAST CFLHHHA  ++PA  R S++QR+ + +IKP QIVC+AQKQ   + +   S VSRRLALTVLIGAAAVGSKVSPADAAYGE+ANVFGKPK NT+F+PY
Sbjct:    1 MASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNSGVSRRLALTVLIGAAAVGSKVSPADAAYGEAANVFGKPKKNTEFMPY 102          
BLAST of CX287378 vs. ExPASy Swiss-Prot
Match: PSBP_PEA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.183e-30
Identity = 71/97 (73.20%), Postives = 76/97 (78.35%), Query Frame = 1
Query:  109 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQKDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPY 399
            MASTQCFLHH    TTP RT S QR V   KP  IVC+AQKQ    D  + VSRRLAL+VLIGAAAVGSKVSPADAAYGE+ANVFGK KTNTD+LPY
Sbjct:    1 MASTQCFLHHQYAITTPTRTLS-QRQVVTTKPNHIVCKAQKQDDVVD--AVVSRRLALSVLIGAAAVGSKVSPADAAYGEAANVFGKAKTNTDYLPY 94          
BLAST of CX287378 vs. ExPASy Swiss-Prot
Match: PSBP3_TOBAC (Oxygen-evolving enhancer protein 2-3, chloroplastic OS=Nicotiana tabacum GN=PSBP3 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.024e-28
Identity = 72/102 (70.59%), Postives = 82/102 (80.39%), Query Frame = 1
Query:  109 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQ-KQAVQKDDGS---AVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPY 399
            MASTQCFLHHHALST PARTS  +  V ++K  Q+ VCRAQ KQ+  + D     +VSRRLALT+LIGAAAVGSKVSPADAAYGE+ANVFGKPKT+TDF  Y
Sbjct:    1 MASTQCFLHHHALST-PARTSLVRGIVPSLKSNQLLVCRAQNKQSAPQQDNVNSVSVSRRLALTLLIGAAAVGSKVSPADAAYGEAANVFGKPKTDTDFQTY 101          
BLAST of CX287378 vs. ExPASy Swiss-Prot
Match: PSBP_FRIAG (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.281e-28
Identity = 65/100 (65.00%), Postives = 81/100 (81.00%), Query Frame = 1
Query:  109 MASTQCFLHHHALSTTPARTSSSQRH--VSNIKPTQIVCRAQKQA-VQKDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPY 399
            MAS+ CFL HHA ST PA TS +  H  V  IKP+Q++CRAQK +   ++  +AVSRRLALT+LIG+AAVG+K++PA+AAYGE+ANVFGK KTNTDFLPY
Sbjct:    1 MASSACFLLHHAPST-PATTSRTPSHRLVPTIKPSQLICRAQKSSDTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFLPY 99          
The following BLAST results are available for this feature:
BLAST of CX287378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PSBP1_TOBAC3.286e-3575.73Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP1_ARATH1.526e-3272.00Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_CUCSA2.204e-3172.73Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_TOBAC3.759e-3172.28Oxygen-evolving enhancer protein 2-2, chloroplasti... [more]
PSBP_SOLTU6.413e-3171.13Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SOLLC1.094e-3073.74Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SPIOL1.866e-3069.61Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_PEA3.183e-3073.20Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP3_TOBAC1.024e-2870.59Oxygen-evolving enhancer protein 2-3, chloroplasti... [more]
PSBP_FRIAG2.281e-2865.00Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC01008H07SK Veg1 Citrus clementina cDNA clone C01008H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287378 ID=CX287378; Name=CX287378; organism=Citrus clementina; type=EST; length=400bp
GAGTTTTTTTTTTTTTTTTTCCTTATTACTTTTATAATTGTTAGTGAAGC
GTTTAGTGAACGAATAAAAAAAAAAAAAAAAAAAAGGGAAGAGAGCGAAA
AGAAAAAAATGGCTTCAACTCAATGCTTCTTGCACCACCATGCACTCTCT
ACTACACCAGCAAGAACATCATCATCTCAGCGCCACGTGTCGAACATCAA
GCCCACCCAAATTGTCTGCCGTGCGCAAAAGCAAGCTGTCCAAAAAGATG
ACGGCAGCGCCGTCTCCCGCCGTTTGGCTCTGACGGTGCTCATTGGTGCT
GCTGCCGTCGGCTCCAAGGTCTCTCCTGCCGACGCTGCCTACGGTGAATC
TGCCAATGTGTTTGGTAAGCCAAAGACCAACACTGACTTCTTGCCATACA
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