CX287383

Overview
NameCX287383
Unique NameCX287383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length405
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15545 contig Ccv1_Contig15545:226..630. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: NLAL1_ARATH (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.767e-32
Identity = 63/73 (86.30%), Postives = 71/73 (97.26%), Query Frame = 1
Query:  187 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            EGPP+EVVEV++F+HACEGDAVTKL+ EKIP+FNAPIYL+NKTQIGKVDEIFGPINES FS+KMMEGIVATSY
Sbjct:   52 EGPPSEVVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMMEGIVATSY 124          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: NLAL2_ARATH (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana GN=At5g18180 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.465e-30
Identity = 62/73 (84.93%), Postives = 69/73 (94.52%), Query Frame = 1
Query:  187 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            EGPP+EVVEV++FLHACEGDAV KL+N KIP+FNAPIYLQNKTQIG+VDEIFGPINES FS+KM EGIVATSY
Sbjct:   39 EGPPSEVVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMREGIVATSY 111          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_NEOFI (H/ACA ribonucleoprotein complex subunit 1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=gar1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.676e-24
Identity = 48/72 (66.67%), Postives = 61/72 (84.72%), Query Frame = 1
Query:  190 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            GPPA+V+E+ +F+HACEG+ V +  N KIPYFNAPIYL+NKT IGKVDE+ GPIN+ YF++K  EGIVATS+
Sbjct:   35 GPPAQVLEMGTFMHACEGEMVCESVNPKIPYFNAPIYLENKTPIGKVDEVLGPINQVYFTIKPQEGIVATSF 106          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_COCIM (H/ACA ribonucleoprotein complex subunit 1 OS=Coccidioides immitis GN=GAR1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.328e-23
Identity = 47/72 (65.28%), Postives = 59/72 (81.94%), Query Frame = 1
Query:  190 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            GPP  V+E+ SF+HACEG+ V +  N KIPYFNAPIYL+NKT +GKVDE+ GPIN+ YF++K  EGIVATS+
Sbjct:   35 GPPTTVLEMGSFMHACEGEMVCESINPKIPYFNAPIYLENKTPVGKVDEVLGPINQVYFTIKPQEGIVATSF 106          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_CANGA (H/ACA ribonucleoprotein complex subunit 1 OS=Candida glabrata GN=GAR1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.046e-23
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  187 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            +GPP  V+E+  F+H CEGD V +  N K+PYFNAPIYL+NKTQ+GKVDEI GP+NE YF++K  EG+ ATS+
Sbjct:   32 QGPPDTVLEMGEFMHPCEGDVVCRSINTKVPYFNAPIYLENKTQVGKVDEILGPLNEVYFTIKCGEGVQATSF 104          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_SCHPO (H/ACA ribonucleoprotein complex subunit 1 OS=Schizosaccharomyces pombe GN=gar1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.590e-23
Identity = 45/72 (62.50%), Postives = 61/72 (84.72%), Query Frame = 1
Query:  190 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            GPP +V+E+  F+H CEG+ V + TN KIPYFNAPIYL+NK+QIGK+DE+FGP+N+ YF+VK  EGIV++S+
Sbjct:   25 GPPDQVIELGLFMHDCEGEMVCQSTNVKIPYFNAPIYLENKSQIGKIDEVFGPMNQVYFTVKPSEGIVSSSF 96          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_CHAGB (H/ACA ribonucleoprotein complex subunit 1 OS=Chaetomium globosum GN=GAR1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.607e-23
Identity = 45/72 (62.50%), Postives = 59/72 (81.94%), Query Frame = 1
Query:  190 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            GPPA V+E+  F+HACEG+ V + TN K+P+FNAPIYL+NKT +GKVDE+ GPIN+ YF++K  EGI ATS+
Sbjct:   32 GPPATVLEMGKFIHACEGEMVIESTNPKVPHFNAPIYLENKTAVGKVDEVLGPINQVYFTIKPSEGIQATSF 103          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_YEAST (H/ACA ribonucleoprotein complex subunit 1 OS=Saccharomyces cerevisiae GN=GAR1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.468e-22
Identity = 45/73 (61.64%), Postives = 59/73 (80.82%), Query Frame = 1
Query:  187 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            +GPP  V+E+ +FLH CEGD V +  N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F++K  +G+ ATS+
Sbjct:   31 QGPPDTVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTIKCGDGVQATSF 103          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_KLULA (H/ACA ribonucleoprotein complex subunit 1 OS=Kluyveromyces lactis GN=GAR1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.504e-22
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:  187 EGPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            +GPP  V+E+ +FLH CEGD V +  N KIPYFNAPIYL+NKTQ+GKVDEI GP+NE +F+VK  +G+ A S+
Sbjct:   29 QGPPDSVLEMGAFLHPCEGDIVCRSINTKIPYFNAPIYLENKTQVGKVDEILGPLNEVFFTVKCSDGVKAESF 101          
BLAST of CX287383 vs. ExPASy Swiss-Prot
Match: GAR1_BOTFB (H/ACA ribonucleoprotein complex subunit 1 OS=Botryotinia fuckeliana (strain B05.10) GN=GAR1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.272e-22
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 1
Query:  190 GPPAEVVEVSSFLHACEGDAVTKLTNEKIPYFNAPIYLQNKTQIGKVDEIFGPINESYFSVKMMEGIVATSY 405
            GPPA+V  + SFLHA EG+ V +  N KIPYFNAPIYL+NKT IGKVDEI GPIN+ YF++K  EGI ATS+
Sbjct:   42 GPPADVFAMGSFLHASEGEIVCESINTKIPYFNAPIYLENKTSIGKVDEILGPINQVYFTIKPTEGIQATSF 113          
The following BLAST results are available for this feature:
BLAST of CX287383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
NLAL1_ARATH7.767e-3286.30Putative H/ACA ribonucleoprotein complex subunit 1... [more]
NLAL2_ARATH1.465e-3084.93H/ACA ribonucleoprotein complex subunit 1-like pro... [more]
GAR1_NEOFI2.676e-2466.67H/ACA ribonucleoprotein complex subunit 1 OS=Neosa... [more]
GAR1_COCIM1.328e-2365.28H/ACA ribonucleoprotein complex subunit 1 OS=Cocci... [more]
GAR1_CANGA5.046e-2361.64H/ACA ribonucleoprotein complex subunit 1 OS=Candi... [more]
GAR1_SCHPO6.590e-2362.50H/ACA ribonucleoprotein complex subunit 1 OS=Schiz... [more]
GAR1_CHAGB8.607e-2362.50H/ACA ribonucleoprotein complex subunit 1 OS=Chaet... [more]
GAR1_YEAST1.468e-2261.64H/ACA ribonucleoprotein complex subunit 1 OS=Sacch... [more]
GAR1_KLULA2.504e-2261.64H/ACA ribonucleoprotein complex subunit 1 OS=Kluyv... [more]
GAR1_BOTFB4.272e-2266.67H/ACA ribonucleoprotein complex subunit 1 OS=Botry... [more]

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Properties
Property NameValue
Genbank descriptionC01008H12SK Veg1 Citrus clementina cDNA clone C01008H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287383 ID=CX287383; Name=CX287383; organism=Citrus clementina; type=EST; length=405bp
ATAACACTAAGCCCCTTGTCGTTTCTCCTAAAATCAACCCAAACCCAGAT
TAAAAAAATGAGACCCCCGAGAGGAGGAGGCGGTTTCAGGGGAGGAAGAG
ACGGAGGCCGCGGTGGAAGGGGCGGCGGCCGTTTTGGTGGAGGCGGCCGT
GGCGGTGGCGGTCGAGGTGGTTTTGGTTTCCGTGACGAAGGACCTCCTGC
CGAAGTTGTTGAGGTATCGTCGTTTCTTCATGCGTGTGAAGGTGATGCTG
TGACAAAGCTCACCAATGAGAAAATACCTTACTTTAATGCTCCAATCTAT
CTGCAAAACAAGACCCAGATAGGGAAAGTTGATGAAATTTTTGGTCCCAT
TAATGAATCTTATTTTTCGGTCAAAATGATGGAAGGTATTGTTGCAACTT
CATAT
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