CX287395

Overview
NameCX287395
Unique NameCX287395
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR4_ORYSJ (Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 6.075e-44
Identity = 82/146 (56.16%), Postives = 105/146 (71.92%), Query Frame = 1
Query:    7 EDSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            ++SSKLIEYF+GI GV +IK  YNPATWMLEVTS++ E  LG+DF++IY +S LYQ   EL+  LS P PGS +L FPT+Y +S + Q LACLWKQ+ SYWR+P Y   R +F I  AL+FG + W  G    K++DLF  +GSMY
Sbjct: 1091 QNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMY 1236          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.767e-43
Identity = 76/145 (52.41%), Postives = 107/145 (73.79%), Query Frame = 1
Query:   10 DSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            +S K+IEYF+ I GVP+IK  YNPATWMLEV+S + E  L +DFA+ Y  S LY++   LVN+LS+P+PG+ +L FPT+Y QS++ Q+ ACLWKQ L+YWRSP+YN+ RF F +F ALL G + W+ G ++     L +++G+MY
Sbjct: 1139 NSQKMIEYFEAIPGVPKIKDKYNPATWMLEVSSVAAEVRLNMDFAEYYKTSDLYKQNKVLVNQLSQPEPGTSDLHFPTKYSQSTIGQFRACLWKQWLTYWRSPDYNLVRFSFTLFTALLLGTIFWKIGTKMGNANSLRMVIGAMY 1283          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 6.716e-43
Identity = 81/144 (56.25%), Postives = 101/144 (70.14%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            SS+LI+YF+ I GV +IK  YNPATWMLEVT+   E  LG+DF+ IY KS LYQ    L+  LS+P P S +L FPT+Y QSS+ Q +ACLWKQ+LSYWR+P YN  RF F    ALLFG + W  G ++ K +DLF  +GSMY
Sbjct: 1101 SSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMY 1244          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 6.716e-43
Identity = 81/144 (56.25%), Postives = 101/144 (70.14%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            SS+LI+YF+ I GV +IK  YNPATWMLEVT+   E  LG+DF+ IY KS LYQ    L+  LS+P P S +L FPT+Y QSS+ Q +ACLWKQ+LSYWR+P YN  RF F    ALLFG + W  G ++ K +DLF  +GSMY
Sbjct: 1101 SSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFWDLGGKVTKSQDLFNAMGSMY 1244          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.146e-42
Identity = 75/145 (51.72%), Postives = 109/145 (75.17%), Query Frame = 1
Query:   10 DSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            +S K+IEYF+GIS VP+IK N+NPATWMLEVTS S+EA++ +DFA++Y  S L++   ELV +LS P  GSK+L FPTR+ Q+   Q+  C WKQ+ SYWRSP YN+ R + M+FA+L+ G + W KGK+++ ++ +F + G+M+
Sbjct: 1087 NSCKMIEYFEGISCVPKIKNNHNPATWMLEVTSTSSEADISIDFAEVYKNSALHKNNEELVKKLSFPPAGSKDLHFPTRFSQNGWGQFKTCFWKQYWSYWRSPSYNLMRSLHMLFASLVSGLLFWDKGKKLDNQQSVFSVFGAMF 1231          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 4.353e-42
Identity = 81/144 (56.25%), Postives = 97/144 (67.36%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            SS+LI+YF+GI GV +IK  YNPATWMLEV++ S E  LG+DF  IY KS L+Q    L+  LS P PGS EL FPT+Y  S + Q LACLWK HLSYWR+P YN  R  F    ALLFG + W  G +  K +DLF  +GSMY
Sbjct: 1108 SSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIALLFGTIFWDLGGKTGKSQDLFNAMGSMY 1251          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.267e-41
Identity = 80/144 (55.56%), Postives = 98/144 (68.06%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            SS+LI+YF+GI GV +I   YNPATWMLEVT+ S E  L +DF  IY KS L+Q    L+  LS P PGS EL FPT+Y QS + Q LACLWKQHLSYWR+P YN  R  F    AL+FG + W  G ++ + +DLF  +GSMY
Sbjct: 1112 SSELIKYFEGIQGVSKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYFPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQDLFNAMGSMY 1255          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 6.286e-41
Identity = 73/145 (50.34%), Postives = 103/145 (71.03%), Query Frame = 1
Query:   10 DSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            +S K++EYF+ I GVP+I+ N NPATWML+V+SA++E  L +DFA+ Y  S ++Q T  LV  LS P PGS +L FP++Y QS+  Q+  CLWKQ  +YWRSP+YN+ R  F +F AL+ G + W+ G ++   +DL VI+GSMY
Sbjct: 1148 NSHKVVEYFEAIPGVPKIEENRNPATWMLDVSSAASEVRLEIDFAEYYRSSTMHQRTKALVKELSNPPPGSDDLYFPSQYSQSTFNQFKLCLWKQWWTYWRSPDYNLVRIFFALFTALMLGTIFWRVGHKMESSKDLLVIIGSMY 1292          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB42G_ARATH (ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.389e-40
Identity = 74/146 (50.68%), Postives = 105/146 (71.92%), Query Frame = 1
Query:    7 EDSSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            + SSK+IEYF  I GVP++K N NPATW+L++TS S+E +LG+D A++Y +S L++E   ++ +      GS+ L   +RY Q+S EQ+ ACLWKQHLSYWR+P YN+ R +FM F  +L G + WQK KEIN ++DLF + GSM+
Sbjct: 1031 QHSSKVIEYFMRIHGVPKLKENSNPATWILDITSKSSEDKLGVDLAQMYEESTLFKENKMVIEQTRCTSLGSERLILSSRYAQTSWEQFKACLWKQHLSYWRNPSYNLTRIIFMSFTCMLCGILFWQKAKEINNQQDLFNVFGSMF 1176          
BLAST of CX287395 vs. ExPASy Swiss-Prot
Match: AB41G_ARATH (ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.120e-40
Identity = 75/144 (52.08%), Postives = 101/144 (70.14%), Query Frame = 1
Query:   13 SSKLIEYFQGISGVPQIKANYNPATWMLEVTSASTEAELGLDFAKIYLKSPLYQETIELVNRLSEPQPGSKELRFPTRYPQSSMEQYLACLWKQHLSYWRSPEYNMARFVFMIFAALLFGAVVWQKGKEINKEEDLFVILGSMY 444
            SSK+I+YF+ I GVP+++ N NPATWML++T  S E  LG+DFA+ Y  S LY+E   +V +LS    GS+ L FP+RY Q+   Q  ACLWKQH SYWR+P +N+ R VF++  +LL   + WQK K+IN ++DLF I GSMY
Sbjct: 1038 SSKVIKYFESIPGVPKVQKNCNPATWMLDITCKSAEHRLGMDFAQAYKDSTLYKENKMVVEQLSSASLGSEALSFPSRYSQTGWGQLKACLWKQHCSYWRNPSHNLTRIVFILLNSLLCSLLFWQKAKDINNQQDLFSIFGSMY 1181          
The following BLAST results are available for this feature:
BLAST of CX287395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PDR4_ORYSJ6.075e-4456.16Pleiotropic drug resistance protein 4 OS=Oryza sat... [more]
PDR12_ORYSJ1.767e-4352.41Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]
PDR3_ORYSJ6.716e-4356.25Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI6.716e-4356.25Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_TOBAC1.146e-4251.72Pleiotropic drug resistance protein 3 OS=Nicotiana... [more]
PDR2_ORYSJ4.353e-4256.25Probable pleiotropic drug resistance protein 2 OS=... [more]
PDR1_ORYSJ1.267e-4155.56Probable pleiotropic drug resistance protein 1 OS=... [more]
PDR15_ORYSJ6.286e-4150.34Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
AB42G_ARATH2.389e-4050.68ABC transporter G family member 42 OS=Arabidopsis ... [more]
AB41G_ARATH3.120e-4052.08ABC transporter G family member 41 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC01009A12SK Veg1 Citrus clementina cDNA clone C01009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287395 ID=CX287395; Name=CX287395; organism=Citrus clementina; type=EST; length=445bp
CGGCACGAGGATTCAAGCAAACTTATTGAATACTTCCAAGGTATTTCAGG
GGTGCCACAAATCAAAGCTAATTACAACCCAGCAACATGGATGTTAGAAG
TCACTTCTGCATCAACTGAAGCAGAACTCGGGTTAGATTTTGCCAAAATT
TATCTCAAGTCACCTCTATATCAGGAAACCATAGAGTTGGTGAACCGGTT
GAGTGAACCACAGCCAGGTTCAAAAGAATTACGCTTTCCCACTCGTTACC
CTCAAAGTAGCATGGAGCAGTATCTGGCATGCCTGTGGAAACAACACTTA
TCATACTGGAGAAGTCCTGAATATAACATGGCTCGTTTTGTTTTTATGAT
CTTTGCAGCACTGCTTTTTGGTGCAGTTGTTTGGCAGAAAGGGAAGGAAA
TCAATAAAGAAGAGGATTTGTTTGTCATACTTGGATCGATGTACA
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