CX287398

Overview
NameCX287398
Unique NameCX287398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 6.176e-67
Identity = 130/136 (95.59%), Postives = 135/136 (99.26%), Query Frame = 3
Query:   69 VMSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            +M+ +FGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLI+EIKK+AKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK
Sbjct:    1 MMNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 136          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CM2A2_DICDI (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 2.207e-48
Identity = 95/133 (71.43%), Postives = 115/133 (86.47%), Query Frame = 3
Query:   78 FLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEK 476
            FLFGK+KTP E+LREN+R L+KS+REI+RER  LQ QEKK+I +IKK AKQGQM + K+MAKDL+RTR+ I+KFY++K+QLQ VSLRIQTL+STQAM EAMKGVTKAM  MNRQMNLP   KIM EFE+Q++K
Sbjct:    2 FLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDK 134          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.895e-45
Identity = 86/134 (64.18%), Postives = 112/134 (83.58%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNE 473
            M  LFG+RKTP ELLR+N+R L++++RE++RERQ L+TQEKK+I++IKK AKQGQM AV++MAKDL+RTR  + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAMG MNRQ+ LP +QKIM EFERQ E
Sbjct:    1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAE 134          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2A_HUMAN (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.895e-45
Identity = 86/134 (64.18%), Postives = 112/134 (83.58%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNE 473
            M  LFG+RKTP ELLR+N+R L++++RE++RERQ L+TQEKK+I++IKK AKQGQM AV++MAKDL+RTR  + KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAMG MNRQ+ LP +QKIM EFERQ E
Sbjct:    1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAE 134          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2A_XENTR (Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 5.087e-45
Identity = 85/134 (63.43%), Postives = 113/134 (84.33%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNE 473
            M FLFG+RKTP E+LR+N+R L+K++RE++RERQ L+ QEKK+I++IKK AKQGQM AVK+MAKDL+RTR  ++KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAM  MNRQ+ LP +QKIM EFE+Q+E
Sbjct:    1 MEFLFGRRKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSE 134          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2A_XENLA (Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 5.087e-45
Identity = 85/134 (63.43%), Postives = 113/134 (84.33%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNE 473
            M FLFG+RKTP ELLR+N+R L++++RE++RERQ L+ QEKK+I++IKK AKQGQM AVK+MAKDL+RTR  ++KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAM  MNRQ+ LP +QKIM EFE+Q+E
Sbjct:    1 MEFLFGRRKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSE 134          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 7.346e-44
Identity = 83/134 (61.94%), Postives = 112/134 (83.58%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNE 473
            M  LFG+RKTP E+LR+N+R L++++R+++RERQ L+ QEKK+I++IKK AKQGQM AVK+MAKDL+RTR  ++KF  +++ +Q VSL+IQTLKS  +M +AMKGVTKAM  MNRQ+ LP +QKIM EFERQ+E
Sbjct:    1 MESLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSE 134          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: CHM2A_CHICK (Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.809e-42
Identity = 83/132 (62.88%), Postives = 107/132 (81.06%), Query Frame = 3
Query:   72 MSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQ 467
            M  LFG+RKTP ELLR+N+R L +++RE++RERQ L+ QEKK+I +IKK AKQGQM AVK+MAKDL+RTR  ++KF  +++ +Q VSL+IQTLKS  +M  AMKGVTKAM  MNRQ+ LP +QKIM EFE+Q
Sbjct:    1 MDLLFGRRKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQ 132          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: DID4_YEAST (DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae GN=DID4 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.389e-34
Identity = 70/135 (51.85%), Postives = 101/135 (74.81%), Query Frame = 3
Query:   69 VMSFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNE 473
            +  ++FGK  TP E L++N+R L+++ RE+ERE++ L+ Q+KKL+SEIKKSAK GQ+ A KV AKDL+RTR+ I+KF  +K+QLQ +SLRIQ ++S+  M  +M   T  +  MNR MNLP LQ+I  EFE+Q++
Sbjct:    3 LFEWVFGKNVTPQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSD 137          
BLAST of CX287398 vs. ExPASy Swiss-Prot
Match: YDS1_SCHPO (Uncharacterized protein C4F8.01 OS=Schizosaccharomyces pombe GN=SPAC4F8.01 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 60/133 (45.11%), Postives = 96/133 (72.18%), Query Frame = 3
Query:   75 SFLFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLISEIKKSAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNE 473
            S+LFG  K+P E LR ++R L ++ RE++RER  L  +E+ LI EIK SAK G  GA ++ A+DL+R R+  +K    K+QLQ +SLR+QT+++++ M ++M+G T+ +  MN+ MN+P++ +I Q+FER+NE
Sbjct:    5 SWLFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARITQQFERENE 137          
The following BLAST results are available for this feature:
BLAST of CX287398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
VPS2A_ARATH6.176e-6795.59Vacuolar protein sorting-associated protein 2 homo... [more]
CM2A2_DICDI2.207e-4871.43Charged multivesicular body protein 2a homolog 2 O... [more]
CHM2A_MOUSE3.895e-4564.18Charged multivesicular body protein 2a OS=Mus musc... [more]
CHM2A_HUMAN3.895e-4564.18Charged multivesicular body protein 2a OS=Homo sap... [more]
CHM2A_XENTR5.087e-4563.43Charged multivesicular body protein 2a OS=Xenopus ... [more]
CHM2A_XENLA5.087e-4563.43Charged multivesicular body protein 2a OS=Xenopus ... [more]
CHM2A_DANRE7.346e-4461.94Charged multivesicular body protein 2a OS=Danio re... [more]
CHM2A_CHICK1.809e-4262.88Charged multivesicular body protein 2a OS=Gallus g... [more]
DID4_YEAST1.389e-3451.85DOA4-independent degradation protein 4 OS=Saccharo... [more]
YDS1_SCHPO3.913e-2945.11Uncharacterized protein C4F8.01 OS=Schizosaccharom... [more]

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Properties
Property NameValue
Genbank descriptionC01009B03SK Veg1 Citrus clementina cDNA clone C01009B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287398 ID=CX287398; Name=CX287398; organism=Citrus clementina; type=EST; length=476bp
GAAGCTTAAAAGCATATACCTTCAGATCAGATCATCATCAGATCGGAGAT
CGAAGTCGTTTGATCATCGTCATGAGTTTCCTCTTCGGCAAGAGAAAAAC
TCCCGCGGAACTTCTGCGGGAAAATAAGAGGATGCTGGATAAGTCTATCA
GAGAAATTGAGAGGGAGAGACAGGGCCTACAAACCCAGGAGAAAAAACTT
ATTTCTGAAATTAAGAAATCTGCCAAACAAGGCCAGATGGGAGCTGTGAA
GGTGATGGCAAAAGACCTTATCAGAACACGACATCAGATAGAAAAATTTT
ATAAGCTTAAATCCCAACTCCAGGGTGTATCTCTCCGAATTCAGACACTG
AAATCGACACAAGCAATGGGAGAAGCTATGAAAGGTGTGACAAAGGCAAT
GGGCCAGATGAATAGACAGATGAACTTGCCTTCACTGCAGAAGATTATGC
AAGAATTTGAGAGGCAGAATGAGAAG
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