CX287399

Overview
NameCX287399
Unique NameCX287399
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length448
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX287399 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.723e-15
Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 2 
Query:   14 YQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECLA 133
            YQ+L A+EARRYRWVR+NHM+YDYCTD+SR+PVPPPEC A
Sbjct:  253 YQSLNAVEARRYRWVRVNHMVYDYCTDRSRFPVPPPECRA 292
[Close]
BLAST of CX287399 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 7.922e-15
Identity = 32/42 (76.19%), Postives = 37/42 (88.10%), Query Frame = 2 
Query:   14 YQALTAMEARRYRWVRLNHMIYDYCTDKSRYPVPPPECLAGI 139
            Y  L+ +EAR YRWVR+NHM+YDYCTDKSR+PVPPPEC AGI
Sbjct:  252 YHQLSPVEARSYRWVRVNHMVYDYCTDKSRFPVPPPECSAGI 293
The following BLAST results are available for this feature:
BLAST of CX287399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
XTH6_ARATH2.723e-1580.00Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH7.922e-1576.19Probable xyloglucan endotransglucosylase/hydrolase... [more]
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Properties
Property NameValue
Genbank descriptionC01009B04SK Veg1 Citrus clementina cDNA clone C01009B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287399 ID=CX287399; Name=CX287399; organism=Citrus clementina; type=EST; length=448bp
CGGCACGAGGAATTATCAAGCCCTCACCGCCATGGAAGCAAGAAGATACA
GATGGGTTCGTCTCAACCACATGATCTATGATTATTGCACTGATAAATCA
AGATACCCAGTACCCCCACCGGAATGCCTTGCCGGCATATAAATTCAACC
CGCCAATTAATTAAGCAGTTGGACGGTACTCCATATCCGTATCATATCAT
GTATATTACTTCACGTACACGTCCTTTGTATTATTCCCTATTCGTGTGAA
AAGACTTATACGCATATCAAGGGAGGGGCAGGAGGAAAAATAAACATTGT
GTGCTTTTAAATGTGATTATGGGAGTGGGAAATATGTGGGTATTCTGCTC
CGCTTGTACCATATATAAGTCTGAATTTGATGCACAGTATTCTGTGCCAA
TAAAAGCCTCTTCATAATTGTGAAAAAAAAAAAAAAAAAAAAAAAAAA
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