CX287402

Overview
NameCX287402
Unique NameCX287402
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10709 contig Ccv1_Contig10709:10..485. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STP7_ARATH (Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.633e-51
Identity = 98/116 (84.48%), Postives = 106/116 (91.38%), Query Frame = 1
Query:  127 MAGGSLGPAGVAKERAEQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            MAGGS GP GVAKERAEQYQGKVT  VI+AC VAAIGGSIFGYDIGISGGVTSMD FL++FFH VY KKK AHE+NYCKYDNQGLAAFTSSLYLAGLV++ VASP+TR+YGRRASI
Sbjct:    1 MAGGSFGPTGVAKERAEQYQGKVTSYVIIACLVAAIGGSIFGYDIGISGGVTSMDEFLEEFFHTVYEKKKQAHESNYCKYDNQGLAAFTSSLYLAGLVSTLVASPITRNYGRRASI 116          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STA_RICCO (Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 6.205e-51
Identity = 99/116 (85.34%), Postives = 104/116 (89.66%), Query Frame = 1
Query:  127 MAGGSLGPAGVAKERAEQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            MAGGSL PAGVAKERAEQYQGKVT +V VAC VAA+GGSIFGYDIGISGGV SMDAFL+KFF  VYLKKKHAHENNYCKYD+Q LAAFTSSLYLAGL AS VA P+TR YGRRASI
Sbjct:    1 MAGGSLAPAGVAKERAEQYQGKVTFAVFVACMVAAVGGSIFGYDIGISGGVISMDAFLEKFFRSVYLKKKHAHENNYCKYDDQRLAAFTSSLYLAGLAASLVAGPITRIYGRRASI 116          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STP14_ARATH (Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 2.451e-31
Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = 1
Query:  127 MAGGSLGPAGVAKERAEQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKK-HAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            MAGG+L   G  K RA  Y+ ++T   I AC V ++GGS+FGYD+G+SGGVTSMD FLK+FF  +Y +K+ H +E +YCKYDNQ L  FTSSLY AGL+++F AS VTR YGRR SI
Sbjct:    1 MAGGALTDEGGLK-RAHLYEHRITSYFIFACIVGSMGGSLFGYDLGVSGGVTSMDDFLKEFFPGIYKRKQMHLNETDYCKYDNQILTLFTSSLYFAGLISTFGASYVTRIYGRRGSI 116          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: HEX6_RICCO (Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.075e-30
Identity = 66/100 (66.00%), Postives = 80/100 (80.00%), Query Frame = 1
Query:  178 QYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHE-NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            QY G++T  V ++C +AA+GG IFGYDIG+SGGVTSMD FLKKFF DVY K K   E +NYCK+D+Q L +FTSSLY+AGLVASF AS VTR +GR+ SI
Sbjct:   13 QYNGRMTSFVALSCMMAAMGGVIFGYDIGVSGGVTSMDPFLKKFFPDVYRKMKEDTEISNYCKFDSQLLTSFTSSLYVAGLVASFFASSVTRAFGRKPSI 112          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STP8_ARATH (Sugar transport protein 8 OS=Arabidopsis thaliana GN=STP8 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.623e-30
Identity = 63/101 (62.38%), Postives = 75/101 (74.26%), Query Frame = 1
Query:  172 AEQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            ++ +  K+T  V +   +AA+GG IFGYDIGISGGVT+MD FLK+FF  VY +KKHAHENNYCKYDNQ L  FTSSLYLA LVASF AS      GRR ++
Sbjct:   11 SKSFDAKMTVYVFICVIIAAVGGLIFGYDIGISGGVTAMDDFLKEFFPSVYERKKHAHENNYCKYDNQFLQLFTSSLYLAALVASFFASATCSKLGRRPTM 111          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STP6_ARATH (Sugar transport protein 6 OS=Arabidopsis thaliana GN=STP6 PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.345e-29
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = 1
Query:  157 VAKERAEQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            V+   A  ++ K+T  V +   +AA+GG IFGYDIGISGGV++MD FLK+FF  V+ +KKH HENNYCKYDNQ L  FTSSLYLA LVASFVAS      GRR ++
Sbjct:    5 VSNANAPAFEAKMTVYVFICVMIAAVGGLIFGYDIGISGGVSAMDDFLKEFFPAVWERKKHVHENNYCKYDNQFLQLFTSSLYLAALVASFVASATCSKLGRRPTM 110          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STP2_ARATH (Sugar transport protein 2 OS=Arabidopsis thaliana GN=STP2 PE=1 SV=3)

HSP 1 Score: 127.487 bits (319), Expect = 2.996e-29
Identity = 64/116 (55.17%), Postives = 82/116 (70.69%), Query Frame = 1
Query:  127 MAGGSLGPAGVAKERAEQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            MA GS+      +E  + +  K+T  V + C +AA+GG +FGYDIGISGGVTSMD FL  FF  VY KK   HENNYCK+D+Q L  FTSSLYLAG+ ASF++S V+R +GR+ +I
Sbjct:    1 MAVGSMN----VEEGTKAFPAKLTGQVFLCCVIAAVGGLMFGYDIGISGGVTSMDTFLLDFFPHVYEKKHRVHENNYCKFDDQLLQLFTSSLYLAGIFASFISSYVSRAFGRKPTI 112          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STC_RICCO (Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.675e-29
Identity = 68/116 (58.62%), Postives = 82/116 (70.69%), Query Frame = 1
Query:  130 AGGSLGPAGVAKERAEQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKK-HAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            A G + P+G  ++    Y G +T  V V C VAA+GG IFGYDIGISGGVTSMD+FLKKFF  VY KKK     N YC+YD+Q L  FTSSLYLA L+AS VAS +TR +GR+ S+
Sbjct:    3 AVGGIPPSGGNRK---VYPGNLTLYVTVTCVVAAMGGLIFGYDIGISGGVTSMDSFLKKFFPSVYRKKKADESSNQYCQYDSQTLTMFTSSLYLAALIASLVASTITRKFGRKLSM 115          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STP1_ARATH (Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.487e-28
Identity = 66/112 (58.93%), Postives = 81/112 (72.32%), Query Frame = 1
Query:  148 PAG--VAKERAEQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKH-AHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            PAG  V  +  + Y GK+TP V+  C VAA+GG IFGYDIGISGGVTSM +FLK+FF  VY K++  A  N YC+YD+  L  FTSSLYLA L++S VAS VTR +GRR S+
Sbjct:    2 PAGGFVVGDGQKAYPGKLTPFVLFTCVVAAMGGLIFGYDIGISGGVTSMPSFLKRFFPSVYRKQQEDASTNQYCQYDSPTLTMFTSSLYLAALISSLVASTVTRKFGRRLSM 113          
BLAST of CX287402 vs. ExPASy Swiss-Prot
Match: STP4_ARATH (Sugar transport protein 4 OS=Arabidopsis thaliana GN=STP4 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.942e-28
Identity = 63/116 (54.31%), Postives = 80/116 (68.97%), Query Frame = 1
Query:  127 MAGGSLGPAGVAKERAEQYQGKVTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASI 474
            MAGG +      +     Y  K+TP V V CF+ A GG IFGYD+GISGGVTSM+ FL++FF  VY K K AHEN YC++D+Q L  FTSSLY+A LV+S  AS +TR +GR+ S+
Sbjct:    1 MAGGFVSQTPGVRN----YNYKLTPKVFVTCFIGAFGGLIFGYDLGISGGVTSMEPFLEEFFPYVYKKMKSAHENEYCRFDSQLLTLFTSSLYVAALVSSLFASTITRVFGRKWSM 112          
The following BLAST results are available for this feature:
BLAST of CX287402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
STP7_ARATH1.633e-5184.48Sugar transport protein 7 OS=Arabidopsis thaliana ... [more]
STA_RICCO6.205e-5185.34Sugar carrier protein A OS=Ricinus communis GN=STA... [more]
STP14_ARATH2.451e-3158.97Sugar transport protein 14 OS=Arabidopsis thaliana... [more]
HEX6_RICCO2.075e-3066.00Hexose carrier protein HEX6 OS=Ricinus communis GN... [more]
STP8_ARATH4.623e-3062.38Sugar transport protein 8 OS=Arabidopsis thaliana ... [more]
STP6_ARATH1.345e-2959.43Sugar transport protein 6 OS=Arabidopsis thaliana ... [more]
STP2_ARATH2.996e-2955.17Sugar transport protein 2 OS=Arabidopsis thaliana ... [more]
STC_RICCO6.675e-2958.62Sugar carrier protein C OS=Ricinus communis GN=STC... [more]
STP1_ARATH1.487e-2858.93Sugar transport protein 1 OS=Arabidopsis thaliana ... [more]
STP4_ARATH1.942e-2854.31Sugar transport protein 4 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC01009B07SK Veg1 Citrus clementina cDNA clone C01009B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287402 ID=CX287402; Name=CX287402; organism=Citrus clementina; type=EST; length=476bp
AAAAAAAAAAAAAACAAGTAATTTTCAATCTCATGCCAGTTTGAGCGAGG
AAACAAGCTTTTGTTTTTCAGTGTTTTGTGTCTGGTTTTTGAGAGGACAG
AAAGAAGGAAGAAGAGGATCTTGAAAATGGCAGGAGGGTCTCTTGGTCCA
GCGGGGGTGGCAAAGGAGAGAGCTGAGCAGTATCAAGGGAAGGTCACACC
TTCTGTGATTGTTGCGTGCTTTGTTGCTGCCATTGGAGGTTCCATTTTTG
GGTATGATATTGGAATTTCAGGAGGAGTTACATCTATGGATGCATTTCTT
AAGAAATTCTTCCATGATGTGTACCTAAAGAAGAAGCATGCACACGAAAA
CAACTATTGCAAGTATGACAATCAGGGGCTTGCAGCATTTACGTCTTCTC
TATACCTTGCTGGATTGGTTGCATCCTTTGTAGCATCTCCAGTTACTAGG
GATTATGGGCGTCGTGCTAGTATAAT
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