CX287412

Overview
NameCX287412
Unique NameCX287412
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287412_ssr476 microsatellite CX287412_ssr476:476..495. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX287412 vs. ExPASy Swiss-Prot
Match: ILV5_ARATH (Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 5.071e-25
Identity = 57/64 (89.06%), Postives = 58/64 (90.62%), Query Frame = 2
Query:    2 YILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 193
            YILTQQALVAVD+ A IN DLISNF SDPVHGAIEVCAQLRPTVDISVP DADFVRPELRQ SN
Sbjct:  528 YILTQQALVAVDSGAAINRDLISNFFSDPVHGAIEVCAQLRPTVDISVPADADFVRPELRQSSN 591          
BLAST of CX287412 vs. ExPASy Swiss-Prot
Match: ILV5_ORYSJ (Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.517e-24
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 2
Query:    2 YILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGS 190
            YILTQQA V VD DAPIN DLISNF+SDPVHGAIEVCA+LRPTVDISVP +ADFVRPELRQ S
Sbjct:  516 YILTQQAFVTVDKDAPINQDLISNFMSDPVHGAIEVCAELRPTVDISVPANADFVRPELRQSS 578          
BLAST of CX287412 vs. ExPASy Swiss-Prot
Match: ILV5_PEA (Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 9.564e-24
Identity = 54/64 (84.38%), Postives = 59/64 (92.19%), Query Frame = 2
Query:    2 YILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQGSN 193
            YILTQQALVAVD+ APIN DLISNF+SDPVHGAI+VCA+LRPT+DISVP  ADFVRPELRQ SN
Sbjct:  518 YILTQQALVAVDSGAPINQDLISNFVSDPVHGAIQVCAELRPTLDISVPAAADFVRPELRQCSN 581          
BLAST of CX287412 vs. ExPASy Swiss-Prot
Match: ILV5_SPIOL (Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.077e-22
Identity = 53/61 (86.89%), Postives = 55/61 (90.16%), Query Frame = 2
Query:    2 YILTQQALVAVDNDAPINGDLISNFLSDPVHGAIEVCAQLRPTVDISVPPDADFVRPELRQ 184
            YIL+QQALVAVDN APIN DLISNFLSDPVH AI VCAQLRP+VDISV  DADFVRPELRQ
Sbjct:  534 YILSQQALVAVDNGAPINQDLISNFLSDPVHEAIGVCAQLRPSVDISVTADADFVRPELRQ 594          
The following BLAST results are available for this feature:
BLAST of CX287412 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ILV5_ARATH5.071e-2589.06Ketol-acid reductoisomerase, chloroplastic OS=Arab... [more]
ILV5_ORYSJ2.517e-2485.71Ketol-acid reductoisomerase, chloroplastic OS=Oryz... [more]
ILV5_PEA9.564e-2484.38Ketol-acid reductoisomerase, chloroplastic OS=Pisu... [more]
ILV5_SPIOL3.077e-2286.89Ketol-acid reductoisomerase, chloroplastic OS=Spin... [more]
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Properties
Property NameValue
Genbank descriptionC01009C06SK Veg1 Citrus clementina cDNA clone C01009C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287412 ID=CX287412; Name=CX287412; organism=Citrus clementina; type=EST; length=501bp
TTACATCCTGACACAACAAGCCTTGGTGGCAGTGGACAATGATGCCCCCA
TCAATGGGGATCTCATCAGCAACTTCCTTTCTGATCCAGTCCATGGAGCC
ATTGAAGTCTGTGCTCAGTTGAGACCAACTGTTGACATTTCAGTGCCACC
AGATGCAGATTTTGTGCGCCCAGAGTTGCGTCAGGGTAGCAATTGAGTCC
TGGTGAATCCTTAACTTTTTGTTTCTAGCCCAAAAAATAATTTCCCCTAG
GGATATTGTAGATAGAGACTTTGCTTAGTCGTGTGAGTTGCTGCTTATTT
ATTTAGTTTTGCTGGGCGAGTGTTGTACTATGTCCGGTTTGGTTGAAGAA
GACATGAGAATATGCTTTCTGGTTTTTGAATTTGGTGGAATAATAGTATG
TTTCCGAGGAATGTGCTGACAGAATATGTGTTGTTTTGATTTTAAAAAAA
AAAAAAAAAAACTCGAGACTAGGGTTCTCTCTCTCTCTCTCTCTCAAATT
A
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