CX287413

Overview
NameCX287413
Unique NameCX287413
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6525 contig Ccv1_Contig6525:11..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287413 vs. ExPASy Swiss-Prot
Match: PRA1D_ARATH (PRA1 family protein D OS=Arabidopsis thaliana GN=PRA1D PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.457e-31
Identity = 59/112 (52.68%), Postives = 83/112 (74.11%), Query Frame = 2
Query:   32 LSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTV 367
            ++ +K T QSI    RPW DFLDLSAF+ P S++DATTR+TQNLTHFR NY++I  + L L+LI  P++I+ F+   +AWFFLYFAR++PLT+ GF +DD +V   L  +++
Sbjct:    6 ITGIKETAQSITGAARPWGDFLDLSAFSFPSSIADATTRVTQNLTHFRINYSIILSILLGLTLITRPIAILAFIAVGLAWFFLYFAREEPLTIFGFTIDDGIVAVLLIGLSI 117          
BLAST of CX287413 vs. ExPASy Swiss-Prot
Match: PR1F2_ARATH (PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.166e-27
Identity = 58/118 (49.15%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   14 ASDTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTV 367
            A D  ++SR K   +S  ATRRPW    D  +  LP    DA +RI  NL +FR+NYA+  L  LFLSL+YHP S+IV  + +V W FLYF RD+PL V G+Q+DDR V+  L  +TV
Sbjct:   16 AIDLEYISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLRDEPLVVFGYQIDDRTVLIGLSVLTV 133          
BLAST of CX287413 vs. ExPASy Swiss-Prot
Match: PR1F3_ARATH (PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.273e-25
Identity = 55/116 (47.41%), Postives = 74/116 (63.79%), Query Frame = 2
Query:   20 DTGFLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTV 367
            D   LSR K   ++  ATRR W    D  +  LP  +SDA TRI  NL +FR NYA++ L+ +F SLI+HP S+IVF + +V W FLYF RD+P+ +  FQ+DDR V+  L  +TV
Sbjct:   18 DVESLSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLRDEPIKLFRFQIDDRTVLIVLSVLTV 133          
BLAST of CX287413 vs. ExPASy Swiss-Prot
Match: PRA1E_ARATH (PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.094e-24
Identity = 51/113 (45.13%), Postives = 75/113 (66.37%), Query Frame = 2
Query:   35 SRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARD--DPLTVLGFQVDDRVVIGALFAVTV 367
            +R K+TTQS+  T RPW + LDLSA +LP    +A   +  N+++FR NYA+  L  +FL LIYHP+S+I F++  + W  LYF+RD  D + + G +VDD++V+  L  VTV
Sbjct:   34 ARAKQTTQSMITTLRPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTV 146          
BLAST of CX287413 vs. ExPASy Swiss-Prot
Match: PR1F4_ARATH (PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.465e-23
Identity = 53/112 (47.32%), Postives = 70/112 (62.50%), Query Frame = 2
Query:   32 LSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTV 367
            +SR K+  +   ATRR W    DL +  LP  +SD  +RI  NL +FRSNYA++ L  +F SLI+HP S+IVF   +  W FLYF RD PL V  FQ+DDR V+  L  +T+
Sbjct:   22 ISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLRDVPLKVFRFQIDDRAVLIGLSVITI 133          
BLAST of CX287413 vs. ExPASy Swiss-Prot
Match: PR1F1_ARATH (PRA1 family protein F1 OS=Arabidopsis thaliana GN=PRA1F1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.526e-23
Identity = 47/101 (46.53%), Postives = 69/101 (68.32%), Query Frame = 2
Query:   68 ATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFARDDPLTVLGFQVDDRVVIGALFAVTVT 370
            ATRRPW   LDL +FN P  L+   TRI  N  +F++NY ++ L ++FLSLI++P S++V L  L AW FLYF RD+PLTV   ++D R+V+  +  +T++
Sbjct:   34 ATRRPWKQMLDLGSFNFPRKLATVITRIRANTVYFQTNYTIVVLFSVFLSLIWNPFSLLVLLALLGAWLFLYFLRDEPLTVFDREIDHRIVLIIMSVITLS 134          
BLAST of CX287413 vs. ExPASy Swiss-Prot
Match: PR1B3_ARATH (PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.684e-20
Identity = 51/115 (44.35%), Postives = 69/115 (60.00%), Query Frame = 2
Query:   29 FLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFAR--DDPLTVLGFQVDDRVVIGALFAVTV 367
            FLSR+  + +   + RRPW + +D SA + P SL+DA +RI +NL +F+ NY  I  L L LSL+ HP S++V L    AW FLY  R  D PL VLG    DR  +G L  +T+
Sbjct:   32 FLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTI 146          
BLAST of CX287413 vs. ExPASy Swiss-Prot
Match: PR1B6_ARATH (PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.666e-17
Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 2
Query:   32 LSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFAR--DDPLTVLGFQVDDRVVIGALFAVTV 367
            LSRV  T +  +A  RPW++ +D SAF+ P SLS+AT+R+ +N ++FR+NY  +  + L  SL+ HP ++ +      +W FLYF R  D PL + G    D   +G L   TV
Sbjct:   30 LSRVLATVRHASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLVAILLAASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTV 143          
BLAST of CX287413 vs. ExPASy Swiss-Prot
Match: PR1B2_ARATH (PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.711e-17
Identity = 46/115 (40.00%), Postives = 67/115 (58.26%), Query Frame = 2
Query:   29 FLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFAR--DDPLTVLGFQVDDRVVIGALFAVTV 367
            FLSR+  + +   + RRPW + +D S+F  P SL+D+ +RI +NL +F+ NY+ I  L L  SL+ HP S++V L  L +W FLY  R  D PL + G    DR  +  L   T+
Sbjct:   31 FLSRLSSSLRESLSQRRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTI 145          
BLAST of CX287413 vs. ExPASy Swiss-Prot
Match: PR1B1_ARATH (PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.410e-16
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 2
Query:   29 FLSRVKRTTQSINATRRPWSDFLDLSAFNLPLSLSDATTRITQNLTHFRSNYAVITLLALFLSLIYHPVSIIVFLLTLVAWFFLYFAR--DDPLTVLGFQVDDRVVIGALFAVTV 367
            F SR+  + +   + RRPW++ +D S+   P SL+DA +RI +NL +F+ NY  I  L L  SL  HP+S++V +  L  W FLY  R  D PL V G    DR  + AL   T+
Sbjct:   29 FFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLLALVLSTI 143          
The following BLAST results are available for this feature:
BLAST of CX287413 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PRA1D_ARATH3.457e-3152.68PRA1 family protein D OS=Arabidopsis thaliana GN=P... [more]
PR1F2_ARATH5.166e-2749.15PRA1 family protein F2 OS=Arabidopsis thaliana GN=... [more]
PR1F3_ARATH1.273e-2547.41PRA1 family protein F3 OS=Arabidopsis thaliana GN=... [more]
PRA1E_ARATH4.094e-2445.13PRA1 family protein E OS=Arabidopsis thaliana GN=P... [more]
PR1F4_ARATH3.465e-2347.32PRA1 family protein F4 OS=Arabidopsis thaliana GN=... [more]
PR1F1_ARATH4.526e-2346.53PRA1 family protein F1 OS=Arabidopsis thaliana GN=... [more]
PR1B3_ARATH4.684e-2044.35PRA1 family protein B3 OS=Arabidopsis thaliana GN=... [more]
PR1B6_ARATH1.666e-1739.47PRA1 family protein B6 OS=Arabidopsis thaliana GN=... [more]
PR1B2_ARATH3.711e-1740.00PRA1 family protein B2 OS=Arabidopsis thaliana GN=... [more]
PR1B1_ARATH1.410e-1640.00PRA1 family protein B1 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC01009C07SK Veg1 Citrus clementina cDNA clone C01009C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287413 ID=CX287413; Name=CX287413; organism=Citrus clementina; type=EST; length=445bp
GTCCTTCACCGCCGCAAGCGACACCGGCTTCCTCTCGCGCGTCAAGAGAA
CCACCCAATCCATAAACGCCACGCGTCGCCCTTGGTCCGACTTCCTAGAC
CTGTCCGCATTCAATCTCCCCCTCTCACTCTCCGACGCCACCACTCGCAT
AACCCAAAACCTCACTCACTTTCGCTCTAATTACGCCGTAATCACATTAC
TAGCCCTCTTCTTGAGCCTAATCTACCACCCCGTCTCGATAATCGTCTTC
CTGCTGACCCTCGTGGCGTGGTTCTTCTTGTACTTCGCGCGCGACGACCC
GTTGACGGTCCTCGGGTTTCAGGTGGACGACCGGGTCGTGATCGGTGCGC
TGTTTGCCGTGACGGTGACTGGCTTAGTCTTGACGCACGTGTGGGTTAAC
GTGTTGGTGTCCGTTGTTGTTGGGGCTGTATTGGTAATTTTGCAT
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