CX287419

Overview
NameCX287419
Unique NameCX287419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length471
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287419_ssr153 microsatellite CX287419_ssr153:153..164. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15151 contig Ccv1_Contig15151:52..522. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287419 vs. ExPASy Swiss-Prot
Match: VPE_CITSI (Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1)

HSP 1 Score: 320.857 bits (821), Expect = 1.774e-87
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 3
Query:    3 TRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG 470
            TRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVE FFAV+LGNKTALTG
Sbjct:    2 TRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTG 157          
BLAST of CX287419 vs. ExPASy Swiss-Prot
Match: VPE_VICSA (Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 8.887e-55
Identity = 99/156 (63.46%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    3 TRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG 470
            ++L++ +  T++V    +    RD+ GD L+LPSE  RFF       +  +DDD  GTRWA+LLAGSNG+WNYRHQ+D+CHAYQLLRKGG K+ENIIVFMYDDIA NEENPRPGVIIN P GDDVY GVPKDYTG +V  +NF+A +LGNK+ALTG
Sbjct:    4 SQLSTLLFFTIVVTFLTVVSSGRDLPGDYLRLPSETSRFFR------EPKNDDDFEGTRWAILLAGSNGYWNYRHQSDVCHAYQLLRKGGSKEENIIVFMYDDIASNEENPRPGVIINKPDGDDVYAGVPKDYTGAEVHADNFYAALLGNKSALTG 153          
BLAST of CX287419 vs. ExPASy Swiss-Prot
Match: VPEG_ARATH (Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 1.516e-54
Identity = 105/157 (66.88%), Postives = 125/157 (79.62%), Query Frame = 3
Query:    3 TRLASGV-LITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG 470
            TR++ GV L  LLV+L  ++  +R    D++KLPS+A RFF         NDDD + GTRWAVL+AGS+G+WNYRHQADICHAYQLLRKGGLK+ENI+VFMYDDIA N ENPRPG IIN PHG DVY+GVPKDYTG+DV V+N FAVILG+KTA+ G
Sbjct:    6 TRVSVGVVLFVLLVSLVAVS-AARSGPDDVIKLPSQASRFFRPAE-----NDDDSNSGTRWAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDDIANNYENPRPGTIINSPHGKDVYQGVPKDYTGDDVNVDNLFAVILGDKTAVKG 156          
BLAST of CX287419 vs. ExPASy Swiss-Prot
Match: VPE1_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 2.420e-52
Identity = 99/156 (63.46%), Postives = 117/156 (75.00%), Query Frame = 3
Query:    3 TRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG 470
            T   + +L  LL+ L  +    RD+ GD L+LPS++       G G  V+      GTRWA+L AGS+G+WNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFN ENPR GVIIN P+GD+VYKGVPKDYTGEDVT  NF+A +LG+K+ LTG
Sbjct:    4 TTATTSLLALLLLFLVALVSAGRDLVGDFLRLPSDS-------GNGDNVH------GTRWAILFAGSSGYWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNSENPRRGVIINSPNGDEVYKGVPKDYTGEDVTAHNFYAALLGDKSKLTG 146          
BLAST of CX287419 vs. ExPASy Swiss-Prot
Match: VPEA_ARATH (Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 1.124e-49
Identity = 91/132 (68.94%), Postives = 111/132 (84.09%), Query Frame = 3
Query:   75 IAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG 470
            ++GD++KLPS A +FF          +DDDS  T+WAVL+AGS+G+WNYRHQAD+CHAYQLL+KGG+K+ENI+VFMYDDIA NEENPRPGVIIN P+G+DVY GVPKDYTG++V V+N  AVILGNKTAL G
Sbjct:   18 VSGDVIKLPSLASKFFR------PTENDDDS--TKWAVLVAGSSGYWNYRHQADVCHAYQLLKKGGVKEENIVVFMYDDIAKNEENPRPGVIINSPNGEDVYNGVPKDYTGDEVNVDNLLAVILGNKTALKG 141          
BLAST of CX287419 vs. ExPASy Swiss-Prot
Match: VPE_RICCO (Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 3.385e-46
Identity = 84/106 (79.25%), Postives = 95/106 (89.62%), Query Frame = 3
Query:  153 DDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG 470
            DDDD +GTRWAVL+AGS GF NYRHQAD+CHAYQLLRKGGLK+ENIIVFMYDDIA NE NPRPGVIINHP G+DVY GVPKDYTGE VT +N +AV+LG+K+A+ G
Sbjct:   54 DDDDQLGTRWAVLVAGSMGFGNYRHQADVCHAYQLLRKGGLKEENIIVFMYDDIAKNELNPRPGVIINHPQGEDVYAGVPKDYTGEHVTAKNLYAVLLGDKSAVQG 159          
BLAST of CX287419 vs. ExPASy Swiss-Prot
Match: VPE_SOYBN (Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 4.888e-45
Identity = 89/150 (59.33%), Postives = 109/150 (72.67%), Query Frame = 3
Query:   21 VLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG 470
            +++ L+      A  +R     ++KLP+E             V+ D D VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGGLK+ENI+VFMYDDIA NE NPR GVIINHP G+D+Y GVPKDYTG++VT EN FAVILG+K+ L G
Sbjct:   20 MMVVLVRVHGAAARPNRKEWDSVIKLPTEP------------VDADSDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGLKEENIVVFMYDDIATNELNPRHGVIINHPEGEDLYAGVPKDYTGDNVTTENLFAVILGDKSKLKG 157          
BLAST of CX287419 vs. ExPASy Swiss-Prot
Match: LEGU_CANEN (Legumain OS=Canavalia ensiformis PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 8.338e-45
Identity = 81/104 (77.88%), Postives = 92/104 (88.46%), Query Frame = 3
Query:  159 DDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG 470
            DD VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGG+K+ENI+VFMYDDIA+N  NPRPGVIINHP G DVY GVPKDYTGEDVT EN +AVILG+K+ + G
Sbjct:   34 DDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIAYNAMNPRPGVIINHPQGPDVYAGVPKDYTGEDVTPENLYAVILGDKSKVKG 137          
BLAST of CX287419 vs. ExPASy Swiss-Prot
Match: VPE2_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.503e-43
Identity = 84/149 (56.38%), Postives = 110/149 (73.83%), Query Frame = 3
Query:   24 LITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG 470
            ++ +++ + G     +D    ++KLP++            +V+ + D VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGG+K+ENI+VFMYDDIA +E NPRPGVIIN+P G DVY GVPKDYTGE VT  NFFAV+LG+K+ + G
Sbjct:   22 MLVMVMRIQGTNGKEQD---SVIKLPTQ------------EVDAESDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIATHELNPRPGVIINNPQGPDVYAGVPKDYTGESVTSHNFFAVLLGDKSKVKG 155          
BLAST of CX287419 vs. ExPASy Swiss-Prot
Match: VPEB_ARATH (Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 3.873e-42
Identity = 75/107 (70.09%), Postives = 91/107 (85.05%), Query Frame = 3
Query:  150 NDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTG 470
            + D+D VGTRWAVL+AGS+G+ NYRHQAD+CHAYQ+LRKGGLK+ENI+V MYDDIA +  NPRPG +INHP GDDVY GVPKDYTG  VT  NF+AV+LG++ A+ G
Sbjct:   42 DQDEDGVGTRWAVLVAGSSGYGNYRHQADVCHAYQILRKGGLKEENIVVLMYDDIANHPLNPRPGTLINHPDGDDVYAGVPKDYTGSSVTAANFYAVLLGDQKAVKG 148          
The following BLAST results are available for this feature:
BLAST of CX287419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
VPE_CITSI1.774e-8798.72Vacuolar-processing enzyme OS=Citrus sinensis PE=2... [more]
VPE_VICSA8.887e-5563.46Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV... [more]
VPEG_ARATH1.516e-5466.88Vacuolar-processing enzyme gamma-isozyme OS=Arabid... [more]
VPE1_PHAVU2.420e-5263.46Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPEA_ARATH1.124e-4968.94Vacuolar-processing enzyme alpha-isozyme OS=Arabid... [more]
VPE_RICCO3.385e-4679.25Vacuolar-processing enzyme OS=Ricinus communis PE=... [more]
VPE_SOYBN4.888e-4559.33Vacuolar-processing enzyme OS=Glycine max PE=2 SV=... [more]
LEGU_CANEN8.338e-4577.88Legumain OS=Canavalia ensiformis PE=1 SV=1[more]
VPE2_PHAVU3.503e-4356.38Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPEB_ARATH3.873e-4270.09Vacuolar-processing enzyme beta-isozyme OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC01009D01SK Veg1 Citrus clementina cDNA clone C01009D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287419 ID=CX287419; Name=CX287419; organism=Citrus clementina; type=EST; length=471bp
TGACGCGCCTTGCCTCCGGCGTGCTAATCACGCTCCTAGTCGCTCTTGCA
GGAATCGCCGATGGAAGCAGAGACATAGCAGGTGACATTCTGAAGCTACC
ATCGGAAGCCTATAGGTTCTTCCATAATGGTGGGGGAGGGGCAAAGGTCA
ACGATGATGATGATTCTGTCGGCACGAGATGGGCCGTCCTGCTTGCCGGA
TCTAATGGCTTCTGGAATTACAGGCATCAGGCTGATATTTGTCATGCTTA
TCAACTCTTGAGGAAAGGTGGGCTGAAGGATGAAAATATTATTGTTTTCA
TGTATGATGACATCGCTTTCAATGAAGAGAACCCAAGGCCTGGAGTCATC
ATTAACCACCCCCATGGCGATGATGTTTACAAAGGAGTTCCAAAGGATTA
CACGGGGGAAGATGTTACTGTTGAAAACTTTTTTGCTGTTATCCTGGGAA
ATAAAACAGCTCTTACAGGGG
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