CX287423

Overview
NameCX287423
Unique NameCX287423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length458
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2938 contig Ccv1_Contig2938:365..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.238e-28
Identity = 71/149 (47.65%), Postives = 94/149 (63.09%), Query Frame = 2
Query:    2 MMSMSLKRLEKSLLALQNSPTKN--KHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGN 442
            +M MS +RL +++ AL  S  K   KHD+QTWL AA+TFQQ CKDS+   G S+    I  ISQKMD+LS+L SN L LV+ I +   PK          +    P WV+A  R+LL   R  A+V+VA+DG+G+YRTV EA++AA GN
Sbjct:  115 LMKMSTRRLRQAMEALNGSSRKRHTKHDVQTWLSAAMTFQQACKDSILDSGGSSSASAISHISQKMDHLSRLVSNSLTLVDTIMKNPKPKT---------KSTALPRWVTAGERRLL-VGRARAHVVVAKDGSGDYRTVMEAVTAAHGN 253          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.274e-15
Identity = 56/166 (33.73%), Postives = 93/166 (56.02%), Query Frame = 2
Query:    5 MSMSLKRLEKSLLALQNSPTKNK-----HDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALV-NRID-------RASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVI 454
            M  +L  L  ++  L+  P K        D++T + +A+T Q+TC D  +     A  +V K + +   ++ ++ SN LA++ N  D       + S P N   NR+L E+ G++P W+SA +R+LLQ+  +  +V+VA DG+G+Y+TVSEA+  A   S  R+VI
Sbjct:  143 MDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGFSHD--EADKKVRKVLLKGQKHVEKMCSNALAMICNMTDTDIANEMKLSAPAN---NRKLVEDNGEWPEWLSAGDRRLLQSSTVTPDVVVAADGSGDYKTVSEAVRKAPEKSSKRYVI 303          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.838e-15
Identity = 58/161 (36.02%), Postives = 80/161 (49.69%), Query Frame = 2
Query:    2 MMSMSLKRLEKSLLALQNSPTKNKH------DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIY 457
            ++  S   L  SL A QN   KN        D++TWL AAL  Q TC +     G    N +++ +      L Q+TS    LV  +    +P     N       G  P+WV  K+RKLLQA  ++ + IVAQDGTGN+  V++A+ AA   S  R+VIY
Sbjct:   96 LLDFSADELNWSLSASQNQKGKNNSTGKLSSDLRTWLSAALVNQDTCSN-----GFEGTNSIVQGLISAG--LGQVTS----LVQELLTQVHP-----NSNQQGPNGQIPSWVKTKDRKLLQADGVSVDAIVAQDGTGNFTNVTDAVLAAPDYSMRRYVIY 240          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.257e-15
Identity = 57/139 (41.01%), Postives = 81/139 (58.27%), Query Frame = 2
Query:   53 NSPTKNKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQA-PRINANVIVAQDGTGNYRTVSEAISAAS---GNRFVIY 457
            +SP   K D QTWL  ALT  +TC+ S+  LG+     V+  +S  +   ++L SN L+L N++          YN      +  FP WV   +RKLLQ  PR  AN++VAQDG+GN +T+ EA++AAS   G+R+VIY
Sbjct:  115 SSPGCTKVDKQTWLSTALTNLETCRASLEDLGVP--EYVLPLLSNNV---TKLISNTLSL-NKVP---------YNE--PSYKDGFPTWVKPGDRKLLQTTPR--ANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIY 234          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.078e-14
Identity = 54/131 (41.22%), Postives = 76/131 (58.02%), Query Frame = 2
Query:   68 NKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGN-RFVIY 457
            +K D QTWL  ALT   TC+     LG++  + V+  +S  +   S L  N LA +N++     P N T       E+  FP+WV   +RKLLQ+     N +VA+DG+GN++T+ EAI AASG+ RFVIY
Sbjct:  122 SKLDAQTWLSTALTNLDTCRAGFLELGVT--DIVLPLMSNNV---SNLLCNTLA-INKV-----PFNYT-----PPEKDGFPSWVKPGDRKLLQSSTPKDNAVVAKDGSGNFKTIKEAIDAASGSGRFVIY 236          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.192e-13
Identity = 46/143 (32.17%), Postives = 75/143 (52.45%), Query Frame = 2
Query:   77 DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNST--------YNRRLDEEQGDFPNWVSAKNRKLLQAPR-----INANVIVAQDGTGNYRTVSEAISAA-SGNR--FVIY 457
            D++ WL  ++ FQQTC DS   +  +   +++K      +    L+SN LA+V RI       N T        Y R+L   +   P WV  + R+L+ A       + AN +VAQDGTG ++T+++A++A   GN+  F+I+
Sbjct:  151 DLRVWLSGSIAFQQTCMDSFGEIKSNLMQDMLKIFKTSRE----LSSNSLAMVTRISTLIPNSNLTGLTGALAKYARKLLSTEDSIPTWVGPEARRLMAAQGGGPGPVKANAVVAQDGTGQFKTITDALNAVPKGNKVPFIIH 289          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.557e-13
Identity = 53/161 (32.92%), Postives = 87/161 (54.04%), Query Frame = 2
Query:    2 MMSMSLKRLEKSLLALQNSPTKNKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRI-DRASYPKNSTYNRRL---DEEQGDFPNWVSAKNRKLLQAP--RINANVIVAQDGTGNYRTVSEAISAASGN---RFVIY 457
            ++  S+  L ++L ++ +S  K + D+ TWL AALT   TC +  + +       V   ++  +  LS+L SN LA+ +   D   +      NRRL   +E +  FP W+  K R++L+ P  +I A++IV++DG G  +T+SEAI  A  N   R +IY
Sbjct:  160 LLDDSVDALSRALSSVVSSSAKPQ-DVTTWLSAALTNHDTCTEGFDGVDDGG---VKDHMTAALQNLSELVSNCLAIFSASHDGDDFAGVPIQNRRLLGVEEREEKFPRWMRPKEREILEMPVSQIQADIIVSKDGNGTCKTISEAIKKAPQNSTRRIIIY 316          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.034e-13
Identity = 51/159 (32.08%), Postives = 85/159 (53.46%), Query Frame = 2
Query:   14 SLKRLEKSLLALQN-----SPTKNKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRI-DRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINA--NVIVAQDGTGNYRTVSEA---ISAASGNRFVIY 457
            +L RL  S+ AL       + + +  +++TWL AALT Q TC D+V  L  +A    +++I   M   ++  SN LA+V +I    S  +   ++RRL      FP W+ A  R+LL+    ++  + +VA+DG+G ++T+ EA   +   S  RF +Y
Sbjct:  151 ALDRLNDSISALGTVAGRIASSASVSNVETWLSAALTDQDTCLDAVGELNSTAARGALQEIETAMRNSTEFASNSLAIVTKILGLLSRFETPIHHRRL----LGFPEWLGAAERRLLEEKNNDSTPDAVVAKDGSGQFKTIGEALKLVKKKSEERFSVY 305          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 48/132 (36.36%), Postives = 71/132 (53.79%), Query Frame = 2
Query:   77 DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA-----SGNRFVIY 457
            D QTWL  ALT  +TC+   + L +S     I   ++    +S L SN LA+   +  A    ++T + +       FP WVS K R+LLQ   + AN++VA+DG+G+++TV  AI  A     +  RFVIY
Sbjct:  138 DAQTWLSTALTNTETCRRGSSDLNVSDFTTPIVSNTK----ISHLISNCLAVNGALLTAGKNDSTTGDSK------GFPTWVSRKERRLLQLQSVRANLVVAKDGSGHFKTVQAAIDVAGRRKVTSGRFVIY 259          
BLAST of CX287423 vs. ExPASy Swiss-Prot
Match: PME58_ARATH (Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 48/143 (33.57%), Postives = 73/143 (51.05%), Query Frame = 2
Query:   77 DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYL----SQLTSNPLALVNRIDRASYPKNST--------YNRRLDEEQGDFPNWVSAKNRKLLQAPR-INANVIVAQDGTGNYRTVSEAISA---ASGNRFVIY 457
            D++ WL  ++ +QQTC D+          E   K+SQ M  +     +LTSN LA++  I       N T        Y R+L   +   P+WV    R+L+     + ANV+VA DG+G Y+T++EA++A   A+   FVIY
Sbjct:  157 DLRVWLSGSIAYQQTCMDTFE--------ETNSKLSQDMQKIFKTSRELTSNGLAMITNISNLLGEFNVTGVTGDLGKYARKLLSAEDGIPSWVGPNTRRLMATKGGVKANVVVAHDGSGQYKTINEALNAVPKANQKPFVIY 291          
The following BLAST results are available for this feature:
BLAST of CX287423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
PME54_ARATH2.238e-2847.65Probable pectinesterase/pectinesterase inhibitor 5... [more]
PMEU1_SOLLC1.274e-1533.73Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME_PRUPE2.838e-1536.02Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME2_CITSI8.257e-1541.01Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME17_ARATH1.078e-1441.22Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME23_ARATH1.192e-1332.17Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME34_ARATH1.557e-1332.92Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME3_PHAVU2.034e-1332.08Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME60_ARATH2.656e-1336.36Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME58_ARATH2.656e-1333.57Probable pectinesterase/pectinesterase inhibitor 5... [more]

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Properties
Property NameValue
Genbank descriptionC01009D05SK Veg1 Citrus clementina cDNA clone C01009D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287423 ID=CX287423; Name=CX287423; organism=Citrus clementina; type=EST; length=458bp
GATGATGAGTATGTCACTCAAACGGCTAGAGAAGTCACTATTAGCCCTAC
AAAATTCCCCAACAAAAAACAAGCATGACATCCAAACGTGGCTCGGCGCT
GCGTTGACTTTCCAGCAAACTTGTAAAGACTCTGTGAATAGCCTCGGTCT
CTCAGCGAGAAATGAGGTTATCAAAAAAATATCTCAAAAAATGGATTATT
TGTCTCAACTGACCAGTAATCCTTTAGCCCTTGTCAACAGGATAGACAGG
GCTAGTTACCCAAAGAACAGCACATATAATCGGCGTCTAGATGAGGAACA
AGGTGATTTTCCCAACTGGGTATCGGCGAAAAATAGGAAACTGCTGCAGG
CCCCGCGCATAAATGCAAATGTGATTGTGGCTCAAGATGGAACTGGCAAT
TATAGAACTGTTTCGGAAGCTATCAGTGCTGCTTCTGGAAATCGTTTTGT
GATTTATG
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