CX287424

Overview
NameCX287424
Unique NameCX287424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287424 vs. ExPASy Swiss-Prot
Match: MTHSD_BOVIN (Methenyltetrahydrofolate synthetase domain-containing protein OS=Bos taurus GN=MTHFSD PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.657e-17
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = -2
Query:  172 YGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTTIPKPQGIYWDKLSPEKLGQIRILRELKGRIEQETGKEQICGPSEKLPPMA 489
            Y M+  MGA+   TPVVT VHD Q+VD IP   L  HD+ VD I TPT+VI T    PKP GI W K+S E LG++ ILR L+ + E++ GK+       + PP A
Sbjct:  161 YAMMVSMGAVSQGTPVVTIVHDCQVVD-IPEALLEDHDLTVDYILTPTRVITTGCERPKPAGIAWSKISCEMLGKMPILRSLRHQ-EEQAGKDVTLRDGPRSPPGA 264          
BLAST of CX287424 vs. ExPASy Swiss-Prot
Match: MTHSD_HUMAN (Methenyltetrahydrofolate synthetase domain-containing protein OS=Homo sapiens GN=MTHFSD PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.164e-17
Identity = 52/104 (50.00%), Postives = 66/104 (63.46%), Query Frame = -2
Query:  181 YGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTTIPKPQGIYWDKLSPEKLGQIRILRELKGRIEQETGKE-QICGPSEKLP 489
            Y M+  MGA+   TPVVT VHD Q+VD IP E +  HD+ VD I TPT+VI T    PKP GI W K+S E + +I ILR L+ R EQ+ GK+  + G  + LP
Sbjct:  162 YAMMVSMGAVSKETPVVTIVHDCQVVD-IPEELVEEHDITVDYILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILRSLRAR-EQQAGKDVTLQGEHQHLP 263          
BLAST of CX287424 vs. ExPASy Swiss-Prot
Match: MTHSD_MOUSE (Methenyltetrahydrofolate synthetase domain-containing protein OS=Mus musculus GN=Mthfsd PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.960e-16
Identity = 47/93 (50.54%), Postives = 60/93 (64.52%), Query Frame = -2
Query:  211 YGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTTIPKPQGIYWDKLSPEKLGQIRILRELKGRIEQETGKE 489
            Y M+  MGA+   TPVVT VHD Q+VD IP   +  HD+ VD I TPT+VI T    PKP GI W K+S E L +I +LR L+ R E++ GK+
Sbjct:  161 YAMMVSMGAVHKGTPVVTIVHDCQVVD-IPEALVEDHDLTVDYILTPTRVITTGCARPKPTGIMWSKVSCEMLTKIPVLRNLRER-EKQAGKD 251          
BLAST of CX287424 vs. ExPASy Swiss-Prot
Match: MTHSD_XENLA (Methenyltetrahydrofolate synthetase domain-containing protein OS=Xenopus laevis GN=mthfsd PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.551e-15
Identity = 46/93 (49.46%), Postives = 61/93 (65.59%), Query Frame = -2
Query:  211 YGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTTIPKPQGIYWDKLSPEKLGQIRILRELKGRIEQETGKE 489
            Y M+  MGA+ + T VVT VHD Q+VD IP E L  HD+ VD I TPT++I T+    KPQGI W  ++ E +G+I ILR L+ R E+  GK+
Sbjct:  165 YAMMVSMGAVTEHTVVVTVVHDCQVVD-IPEELLEDHDLTVDFILTPTRIIKTDCKRAKPQGIIWSMITREMMGKIPILRNLQDR-ERRAGKD 255          
BLAST of CX287424 vs. ExPASy Swiss-Prot
Match: MTHSD_DANRE (Methenyltetrahydrofolate synthetase domain-containing protein OS=Danio rerio GN=mthfsd PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.454e-15
Identity = 45/93 (48.39%), Postives = 62/93 (66.67%), Query Frame = -2
Query:  211 YGMLRYMGAIDDSTPVVTSVHDYQLVDDIPVEKLLIHDVPVDIICTPTQVIFTNTTIPKPQGIYWDKLSPEKLGQIRILRELKGRIEQETGKE 489
            Y M+  MG++ +ST V+T VHD Q++D IP E +  HD+ VD I T T+VI T    PKPQGI W  L  E+L +I IL++L+  +EQE GK+
Sbjct:  165 YAMMACMGSVTESTWVITVVHDCQVMD-IPEELIERHDLMVDFIITATRVIKTECKHPKPQGIIWSMLHKEELKKIPILKKLR-TLEQEAGKD 255          
The following BLAST results are available for this feature:
BLAST of CX287424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MTHSD_BOVIN1.657e-1748.11Methenyltetrahydrofolate synthetase domain-contain... [more]
MTHSD_HUMAN2.164e-1750.00Methenyltetrahydrofolate synthetase domain-contain... [more]
MTHSD_MOUSE6.960e-1650.54Methenyltetrahydrofolate synthetase domain-contain... [more]
MTHSD_XENLA1.551e-1549.46Methenyltetrahydrofolate synthetase domain-contain... [more]
MTHSD_DANRE3.454e-1548.39Methenyltetrahydrofolate synthetase domain-contain... [more]
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Properties
Property NameValue
Genbank descriptionC01009D06SK Veg1 Citrus clementina cDNA clone C01009D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287424 ID=CX287424; Name=CX287424; organism=Citrus clementina; type=EST; length=490bp
TTTTTTTTTTTTTTTTTTGAGTAAGAATTTTAATCTCTTGTCATGTATAT
AAGAAAATAAAAATGAACGATAATCAGACATCATGTATAAGAGCAAGGTA
CTAGAAATGGAATGTCTACAATTTCTAGTGTCTACTTTTCTACATTTACA
AACACATTAACGCCTCCTTTTGGCCATTGGGGGCAATTTCTCTGATGGAC
CACAAATTTGTTCCTTCCCCGTCTCCTGTTCAATTCTACCCTTGAGCTCC
CTAAGTATCCGAATTTGTCCCAGCTTCTCCGGGGACAATTTGTCCCAGTA
GATCCCTTGAGGCTTTGGGATTGTTGTGTTGGTAAAAATGACTTGGGTGG
GAGTGCATATGATGTCCACAGGAACATCATGTATCAGCAGTTTCTCCACT
GGAATATCATCTACCAATTGATAGTCATGCACAGAGGTGACAACAGGTGT
TGAGTCATCAATGGCACCCATATATCGTAGCATCCCATAT
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