CX287428

Overview
NameCX287428
Unique NameCX287428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13542 contig Ccv1_Contig13542:709..1344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287428 vs. ExPASy Swiss-Prot
Match: Y1390_ARATH (Uncharacterized protein At1g03900 OS=Arabidopsis thaliana GN=At1g03900 PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 1.701e-89
Identity = 163/189 (86.24%), Postives = 174/189 (92.06%), Query Frame = 1
Query:   76 MSFDDEE---SLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQPGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKP-TSGTGMLSAA 630
            MSF++EE   + EHTLLVVREV VYKIPPRTTSGGYKCGEWLQSDKIW+GRLRVVSCKDRCEIRLED NSG+LFAACFV PG+RENSVE  LDSSRYFVL+I+DG GK+AFIGLGF ERNEAFDFNVALSDHEKYVRRE EKE+GE SESD HIDIHPAVNHRLKEGETIRINVKPKP T+GTGMLSAA
Sbjct:    1 MSFEEEEEEETFEHTLLVVREVSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDLFAACFVDPGRRENSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALSDHEKYVRREKEKETGETSESDNHIDIHPAVNHRLKEGETIRINVKPKPTTNGTGMLSAA 189          
BLAST of CX287428 vs. ExPASy Swiss-Prot
Match: NECP1_BOVIN (Adaptin ear-binding coat-associated protein 1 OS=Bos taurus GN=NECAP1 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.083e-35
Identity = 87/191 (45.55%), Postives = 120/191 (62.83%), Query Frame = 1
Query:   91 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV-----------KPKPTSGTGMLS 624
            E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF++R +AFDFNV+L DH K+V++E      E+S+    +D  P ++   KEG+TI++++           KPK T+GTG LS
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKVAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFSDRGDAFDFNVSLQDHFKWVKQE-----SEISKESQEMDSRPKLDLGFKEGQTIKLSIGNITTKKGGTSKPK-TAGTGGLS 185          
BLAST of CX287428 vs. ExPASy Swiss-Prot
Match: NECP1_RAT (Adaptin ear-binding coat-associated protein 1 OS=Rattus norvegicus GN=Necap1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.115e-35
Identity = 90/193 (46.63%), Postives = 119/193 (61.66%), Query Frame = 1
Query:   91 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINV-----------KPKPTSGTGMLS 624
            E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFNV+L DH K+V++E E  KES EM       D  P ++   KEG+TI++++           KP+  SGTG LS
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGI---AVETVADSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISKESQEM-------DSRPKLDLGFKEGQTIKLSIGNITAKKGGTSKPR-ASGTGGLS 185          
BLAST of CX287428 vs. ExPASy Swiss-Prot
Match: NECP1_MOUSE (Adaptin ear-binding coat-associated protein 1 OS=Mus musculus GN=Necap1 PE=1 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.374e-35
Identity = 90/193 (46.63%), Postives = 119/193 (61.66%), Query Frame = 1
Query:   91 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELE--KESGEMSESDGHIDIHPAVNHRLKEGETIRINV-----------KPKPTSGTGMLS 624
            E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFNV+L DH K+V++E E  KES EM       D  P ++   KEG+TI++++           KP+  SGTG LS
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKIAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQETEISKESQEM-------DNRPKLDLGFKEGQTIKLSIGNITAKKGGASKPR-ASGTGGLS 185          
BLAST of CX287428 vs. ExPASy Swiss-Prot
Match: NECP1_PONAB (Adaptin ear-binding coat-associated protein 1 OS=Pongo abelii GN=NECAP1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.019e-35
Identity = 82/189 (43.39%), Postives = 115/189 (60.85%), Query Frame = 1
Query:   91 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV-----------KPKPTSGTGM 618
            E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFNV+L DH K+V++E      E+S+    +D  P ++   KEG+TI++++           KP+   G G+
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQE-----SEISKESQEMDARPKLDLGFKEGQTIKLSIGNITNKEGGASKPRTARGGGL 184          
BLAST of CX287428 vs. ExPASy Swiss-Prot
Match: NECP2_RAT (Adaptin ear-binding coat-associated protein 2 OS=Rattus norvegicus GN=Necap2 PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.197e-34
Identity = 79/169 (46.75%), Postives = 106/169 (62.72%), Query Frame = 1
Query:   88 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 588
            +E   E  L V  EV VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED  SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V+++ E      +  +G     P ++   KEG+TI+IN+
Sbjct:    2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEG-----PKLDLGFKEGQTIKINI 162          
BLAST of CX287428 vs. ExPASy Swiss-Prot
Match: NECP2_MOUSE (Adaptin ear-binding coat-associated protein 2 OS=Mus musculus GN=Necap2 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.197e-34
Identity = 83/192 (43.23%), Postives = 113/192 (58.85%), Query Frame = 1
Query:   88 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV-------------KPKPTSGTGM 618
            +E   E  L V  EV VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED  SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIGLGF +R +AFDFNVAL DH K+V+++ E      +  +G     P ++   K+G+TI+IN+             + +PTS  G+
Sbjct:    2 EESEYESVLCVKPEVHVYRIPPRATNRGYRASEWQLDQPSWSGRLRITAKGKVAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGLGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDEG-----PKLDLGFKDGQTIKINIANMRKKEGAAGTPRARPTSAGGL 185          
BLAST of CX287428 vs. ExPASy Swiss-Prot
Match: NECP1_HUMAN (Adaptin ear-binding coat-associated protein 1 OS=Homo sapiens GN=NECAP1 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 2.042e-34
Identity = 82/189 (43.39%), Postives = 114/189 (60.32%), Query Frame = 1
Query:   91 EESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV-----------KPKPTSGTGM 618
            E   E  L V  +V VY+IPPR ++ GY+  +W      WTGRLR+ S      I+LED  SGELFA   V+  PG    +VETV DSSRYFV++I+DGTG+ AFIG+GF +R +AFDFNV+L DH K+V++E      E+S+    +D  P ++   KEG+TI++ +           KP+   G G+
Sbjct:    4 ELEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSKGKTAYIKLEDKVSGELFAQAPVEQYPGI---AVETVTDSSRYFVIRIQDGTGRSAFIGIGFTDRGDAFDFNVSLQDHFKWVKQE-----SEISKESQEMDARPKLDLGFKEGQTIKLCIGNITNKKGGASKPRTARGGGL 184          
BLAST of CX287428 vs. ExPASy Swiss-Prot
Match: NECP2_HUMAN (Adaptin ear-binding coat-associated protein 2 OS=Homo sapiens GN=NECAP2 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.484e-34
Identity = 77/169 (45.56%), Postives = 105/169 (62.13%), Query Frame = 1
Query:   88 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 588
            +E   E  L V  +V VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED  SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V+++ E      +   G     P ++   KEG+TI++N+
Sbjct:    2 EESGYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQMAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQG-----PKLDLGFKEGQTIKLNI 162          
BLAST of CX287428 vs. ExPASy Swiss-Prot
Match: NECP2_BOVIN (Adaptin ear-binding coat-associated protein 2 OS=Bos taurus GN=NECAP2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.942e-34
Identity = 77/169 (45.56%), Postives = 105/169 (62.13%), Query Frame = 1
Query:   88 DEESLEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINV 588
            +E   E  L V  +V VY+IPPR T+ GY+  EW      W+GRLR+ +      I+LED  SGELFA   V   PG    +VE+V DSSRYFV++IEDG G+ AFIG+GF +R +AFDFNVAL DH K+V+++ E      +   G     P ++   KEG+TI++N+
Sbjct:    2 EEAEYESVLCVKPDVHVYRIPPRATNRGYRAAEWQLDQPSWSGRLRITAKGQVAYIKLEDRTSGELFAQAPVDQFPG---TAVESVTDSSRYFVIRIEDGNGRRAFIGIGFGDRGDAFDFNVALQDHFKWVKQQCEFAKQAQNPDQG-----PKLDLSFKEGQTIKLNI 162          
The following BLAST results are available for this feature:
BLAST of CX287428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
Y1390_ARATH1.701e-8986.24Uncharacterized protein At1g03900 OS=Arabidopsis t... [more]
NECP1_BOVIN1.083e-3545.55Adaptin ear-binding coat-associated protein 1 OS=B... [more]
NECP1_RAT4.115e-3546.63Adaptin ear-binding coat-associated protein 1 OS=R... [more]
NECP1_MOUSE5.374e-3546.63Adaptin ear-binding coat-associated protein 1 OS=M... [more]
NECP1_PONAB7.019e-3543.39Adaptin ear-binding coat-associated protein 1 OS=P... [more]
NECP2_RAT1.197e-3446.75Adaptin ear-binding coat-associated protein 2 OS=R... [more]
NECP2_MOUSE1.197e-3443.23Adaptin ear-binding coat-associated protein 2 OS=M... [more]
NECP1_HUMAN2.042e-3443.39Adaptin ear-binding coat-associated protein 1 OS=H... [more]
NECP2_HUMAN3.484e-3445.56Adaptin ear-binding coat-associated protein 2 OS=H... [more]
NECP2_BOVIN5.942e-3445.56Adaptin ear-binding coat-associated protein 2 OS=B... [more]

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Properties
Property NameValue
Genbank descriptionC01009D10SK Veg1 Citrus clementina cDNA clone C01009D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287428 ID=CX287428; Name=CX287428; organism=Citrus clementina; type=EST; length=636bp
GTCATTGTTCTTCAATTCAGTTAAGTCACCTCAAATTCACTCGCATTTCT
TCTTCATTTCCCAAACAAAACGACCATGTCGTTCGACGACGAAGAATCGT
TAGAGCACACGCTCCTTGTCGTCCGCGAAGTCTGCGTTTACAAAATCCCC
CCGCGTACAACCTCTGGCGGCTACAAATGCGGCGAATGGTTGCAGTCCGA
CAAGATCTGGACAGGCCGCCTCCGGGTCGTATCCTGTAAGGACCGGTGTG
AGATCCGGTTAGAGGATCCCAACTCCGGCGAGCTCTTCGCAGCTTGTTTC
GTTCAACCCGGCCAGCGTGAGAACTCTGTGGAGACCGTCCTCGACTCGTC
CCGATATTTCGTGCTCAAGATCGAGGACGGTACAGGAAAACACGCGTTTA
TTGGATTAGGCTTTAATGAGAGAAATGAAGCGTTTGATTTCAACGTCGCG
TTGTCGGATCACGAGAAATACGTGAGACGAGAACTCGAGAAGGAGAGTGG
CGAGATGAGTGAGAGCGATGGTCATATCGATATACATCCCGCAGTTAATC
ATAGATTAAAGGAAGGAGAAACGATCCGGATCAATGTGAAGCCCAAACCG
ACTAGTGGAACTGGCATGCTTTCAGCTGCAGGGCTG
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