CX287431

Overview
NameCX287431
Unique NameCX287431
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length483
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig52 contig Ccv1_Contig52:1..483. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2A_ARATH (Proteasome subunit beta type-2-A OS=Arabidopsis thaliana GN=PBD1 PE=1 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 5.781e-68
Identity = 124/140 (88.57%), Postives = 135/140 (96.43%), Query Frame = 1
Query:   61 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLS 480
            MECVFGLVG+GFAI+ ADTSAVHSIL+HK+NEDKIMVLDSHKL+AASGEPGDRVQFTE++QKNVSLY+FRNGIPLTTAAAANFTRGELATALRK+PY VNIL+AGYD E+G SLYYIDYIATLHKVDK AFGYGSYFSLS
Sbjct:    1 MECVFGLVGNGFAIVAADTSAVHSILLHKNNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQKNVSLYKFRNGIPLTTAAAANFTRGELATALRKNPYSVNILMAGYDDESGASLYYIDYIATLHKVDKGAFGYGSYFSLS 140          
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2B_ARATH (Proteasome subunit beta type-2-B OS=Arabidopsis thaliana GN=PBD2 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 2.197e-67
Identity = 123/140 (87.86%), Postives = 133/140 (95.00%), Query Frame = 1
Query:   61 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLS 480
            MECVFGLVG+GFAI+ ADTSAVHSIL+HK+ EDKIM LDSHKL+AASGEPGDRVQFTE++QKNVSLYQFRNGIPL+TAAAANFTRGELATALRK+PY VNIL+AGYDKE G SLYYIDYIATLHKVDK AFGYGSYFSLS
Sbjct:    1 MECVFGLVGNGFAIVAADTSAVHSILLHKNKEDKIMTLDSHKLVAASGEPGDRVQFTEYVQKNVSLYQFRNGIPLSTAAAANFTRGELATALRKNPYSVNILMAGYDKEAGASLYYIDYIATLHKVDKGAFGYGSYFSLS 140          
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2_ORYSJ (Proteasome subunit beta type-2 OS=Oryza sativa subsp. japonica GN=PBD1 PE=2 SV=2)

HSP 1 Score: 231.106 bits (588), Expect = 1.992e-60
Identity = 110/141 (78.01%), Postives = 125/141 (88.65%), Query Frame = 1
Query:   61 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSM 483
            MECV G+VG  FA++ ADTSAV SILVHK++EDK+MVLDSHKL+ ASGEPGDRVQFTEFIQKN+ LYQFRN IPL+TAA ANFTRGELATALRK+PY VN+LLAGYD + G SLYYIDYIAT HK++K AFGYGSYF LS+
Sbjct:    1 MECVIGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFIQKNLHLYQFRNNIPLSTAATANFTRGELATALRKNPYYVNVLLAGYDSDVGASLYYIDYIATFHKIEKGAFGYGSYFCLSL 141          
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2_DICDI (Proteasome subunit beta type-2 OS=Dictyostelium discoideum GN=psmB2 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.176e-36
Identity = 73/144 (50.69%), Postives = 99/144 (68.75%), Query Frame = 1
Query:   61 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALRKSPYMVNILLAGYDKET---GPSLYYIDYIATLHKVDKAAFGYGSYFSLSM 483
            ME +      G  + +AD+S  HSI+  K +EDKI+ +D HKL+ ++GE GDRVQFTE+I KN+ LY  RN  P++T AAANF R ELAT++R  PY +N++LAGYDKE    G SLYY+DY+ +L K++    GY SYF L +
Sbjct:    1 METLLAFKVKGGVLCLADSSVNHSIVKMKDDEDKILEIDGHKLLLSAGEAGDRVQFTEYISKNIKLYSLRNSYPMSTPAAANFIRNELATSIRSHPYSINLILAGYDKEVEDGGTSLYYMDYLGSLQKLNFGCHGYASYFLLGL 144          
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2_RAT (Proteasome subunit beta type-2 OS=Rattus norvegicus GN=Psmb2 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.487e-31
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 1
Query:   61 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSM 483
            ME + G+ G  + ++ +D  A  +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS+
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSI 142          
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2_MOUSE (Proteasome subunit beta type-2 OS=Mus musculus GN=Psmb2 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.487e-31
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 1
Query:   61 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSM 483
            ME + G+ G  + ++ +D  A  +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS+
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSI 142          
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2_HUMAN (Proteasome subunit beta type-2 OS=Homo sapiens GN=PSMB2 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.487e-31
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 1
Query:   61 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSM 483
            ME + G+ G  + ++ +D  A  +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS+
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSI 142          
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2_BOVIN (Proteasome subunit beta type-2 OS=Bos taurus GN=PSMB2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.537e-31
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 1
Query:   61 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETGPSLYYIDYIATLHKVDKAAFGYGSYFSLSM 483
            ME + G+ G  + ++ +D  A  +I+  K + DK+  +    L+   GE GD VQF E+IQKNV LY+ RNG  L+  AAANFTR  LA  LR ++PY VN+LLAGYD+  GP+LYY+DY+A L K   AA GYG++ +LS+
Sbjct:    1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADYLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSI 142          
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2_NEUCR (Probable proteasome subunit beta type-2 OS=Neurospora crassa GN=15E6.60 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.663e-30
Identity = 69/143 (48.25%), Postives = 92/143 (64.34%), Query Frame = 1
Query:   61 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKET-GPSLYYIDYIATLHKVDKAAFGYGSYFSLSM 483
            M  + G+ G  F I+ A  +A+    + K+++DK   L+ H L+A SGE GD VQF E+ Q N  LY  RNG  L+ +A ANF RGELAT+LR + PY VN+LL G D  T  PSLY++DY+A+L KV  AA GY  Y+ LS+
Sbjct:    1 MYVLLGITGKDFTIIAASKAAMRGATILKASDDKTRSLNKHTLMAFSGEAGDTVQFAEYTQANAQLYSMRNGTDLSPSALANFVRGELATSLRSRKPYNVNLLLGGVDPITHKPSLYWLDYLASLAKVPYAAHGYAQYYCLSI 143          
BLAST of CX287431 vs. ExPASy Swiss-Prot
Match: PSB2_SCHPO (Probable proteasome subunit beta type-2 OS=Schizosaccharomyces pombe GN=SPAC31A2.04c PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.222e-27
Identity = 63/143 (44.06%), Postives = 91/143 (63.64%), Query Frame = 1
Query:   61 MECVFGLVGDGFAILVADTSAVHSILVHKSNEDKIMVLDSHKLIAASGEPGDRVQFTEFIQKNVSLYQFRNGIPLTTAAAANFTRGELATALR-KSPYMVNILLAGYDKETG-PSLYYIDYIATLHKVDKAAFGYGSYFSLSM 483
            ME +  + G  F +  + +SAV  I V K ++DK  +L+SH L+   GE GD   F E+I  N+SLY  R+ + L+  A A+FTR +LAT+LR + PY VNILLAGY+   G P L+++DY+AT  +V  A  GY S++ LS+
Sbjct:    1 MESLLAVQGQDFVLTASSSSAVRGITVLKPDDDKSQILNSHNLMLYCGEAGDTTNFAEYIAANISLYTLRHNLNLSPEATASFTRKQLATSLRSRKPYQVNILLAGYETNLGKPELFWLDYLATCVRVPYACQGYSSFYCLSI 143          
The following BLAST results are available for this feature:
BLAST of CX287431 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSB2A_ARATH5.781e-6888.57Proteasome subunit beta type-2-A OS=Arabidopsis th... [more]
PSB2B_ARATH2.197e-6787.86Proteasome subunit beta type-2-B OS=Arabidopsis th... [more]
PSB2_ORYSJ1.992e-6078.01Proteasome subunit beta type-2 OS=Oryza sativa sub... [more]
PSB2_DICDI1.176e-3650.69Proteasome subunit beta type-2 OS=Dictyostelium di... [more]
PSB2_RAT1.487e-3147.89Proteasome subunit beta type-2 OS=Rattus norvegicu... [more]
PSB2_MOUSE1.487e-3147.89Proteasome subunit beta type-2 OS=Mus musculus GN=... [more]
PSB2_HUMAN1.487e-3147.89Proteasome subunit beta type-2 OS=Homo sapiens GN=... [more]
PSB2_BOVIN2.537e-3147.89Proteasome subunit beta type-2 OS=Bos taurus GN=PS... [more]
PSB2_NEUCR3.663e-3048.25Probable proteasome subunit beta type-2 OS=Neurosp... [more]
PSB2_SCHPO2.222e-2744.06Probable proteasome subunit beta type-2 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionC01009E03SK Veg1 Citrus clementina cDNA clone C01009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287431 ID=CX287431; Name=CX287431; organism=Citrus clementina; type=EST; length=483bp
CGGCACGAGGCACAACAAAATCAAATCAAAACAGATCCGACAACAACAGA
ACAGTAAGCAATGGAGTGCGTATTTGGTCTTGTCGGCGACGGCTTCGCAA
TCTTAGTGGCCGACACGTCGGCAGTCCACAGTATCTTGGTTCATAAATCG
AACGAGGACAAGATCATGGTCCTCGACTCTCACAAACTCATCGCCGCCAG
TGGCGAACCCGGTGACCGTGTTCAATTTACGGAGTTCATTCAGAAGAATG
TGTCGTTGTATCAATTTCGTAACGGAATTCCATTGACTACTGCTGCGGCG
GCGAACTTTACCCGAGGAGAGCTTGCTACTGCTCTGAGAAAGAGCCCTTA
CATGGTTAACATCCTTCTAGCTGGGTATGACAAGGAGACAGGACCATCTC
TTTACTACATTGACTACATTGCAACCCTTCACAAAGTTGATAAGGCAGCT
TTTGGTTATGGATCCTATTTTTCGCTCTCCATG
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