CX287433

Overview
NameCX287433
Unique NameCX287433
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length531
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287433_ssr162 microsatellite CX287433_ssr162:162..173. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15151 contig Ccv1_Contig15151:43..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287433 vs. ExPASy Swiss-Prot
Match: VPE_CITSI (Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 1.360e-98
Identity = 172/174 (98.85%), Postives = 173/174 (99.43%), Query Frame = 3
Query:    9 MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIF 530
            MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVE FFAV+LGNKTALTGGSGKVVDSGPNDHIFIF
Sbjct:    1 MTRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVEKFFAVVLGNKTALTGGSGKVVDSGPNDHIFIF 174          
BLAST of CX287433 vs. ExPASy Swiss-Prot
Match: VPEG_ARATH (Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 3.058e-66
Identity = 124/176 (70.45%), Postives = 144/176 (81.82%), Query Frame = 3
Query:    6 TMTRLASGV-LITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIF 530
            TMTR++ GV L  LLV+L  ++  +R    D++KLPS+A RFF         NDDD + GTRWAVL+AGS+G+WNYRHQADICHAYQLLRKGGLK+ENI+VFMYDDIA N ENPRPG IIN PHG DVY+GVPKDYTG+DV V+N FAVILG+KTA+ GGSGKVVDSGPNDHIFIF
Sbjct:    4 TMTRVSVGVVLFVLLVSLVAVS-AARSGPDDVIKLPSQASRFFRPAE-----NDDDSNSGTRWAVLVAGSSGYWNYRHQADICHAYQLLRKGGLKEENIVVFMYDDIANNYENPRPGTIINSPHGKDVYQGVPKDYTGDDVNVDNLFAVILGDKTAVKGGSGKVVDSGPNDHIFIF 173          
BLAST of CX287433 vs. ExPASy Swiss-Prot
Match: VPE_VICSA (Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 7.532e-65
Identity = 114/173 (65.90%), Postives = 138/173 (79.77%), Query Frame = 3
Query:   12 TRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIF 530
            ++L++ +  T++V    +    RD+ GD L+LPSE  RFF       +  +DDD  GTRWA+LLAGSNG+WNYRHQ+D+CHAYQLLRKGG K+ENIIVFMYDDIA NEENPRPGVIIN P GDDVY GVPKDYTG +V  +NF+A +LGNK+ALTGGSGKVVDSGPNDHIF++
Sbjct:    4 SQLSTLLFFTIVVTFLTVVSSGRDLPGDYLRLPSETSRFFR------EPKNDDDFEGTRWAILLAGSNGYWNYRHQSDVCHAYQLLRKGGSKEENIIVFMYDDIASNEENPRPGVIINKPDGDDVYAGVPKDYTGAEVHADNFYAALLGNKSALTGGSGKVVDSGPNDHIFVY 170          
BLAST of CX287433 vs. ExPASy Swiss-Prot
Match: VPE1_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 2.679e-62
Identity = 115/173 (66.47%), Postives = 134/173 (77.46%), Query Frame = 3
Query:   12 TRLASGVLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIF 530
            T   + +L  LL+ L  +    RD+ GD L+LPS++       G G  V+      GTRWA+L AGS+G+WNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFN ENPR GVIIN P+GD+VYKGVPKDYTGEDVT  NF+A +LG+K+ LTGGSGKVV+SGPNDHIFIF
Sbjct:    4 TTATTSLLALLLLFLVALVSAGRDLVGDFLRLPSDS-------GNGDNVH------GTRWAILFAGSSGYWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNSENPRRGVIINSPNGDEVYKGVPKDYTGEDVTAHNFYAALLGDKSKLTGGSGKVVNSGPNDHIFIF 163          
BLAST of CX287433 vs. ExPASy Swiss-Prot
Match: VPEA_ARATH (Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 7.295e-60
Identity = 107/149 (71.81%), Postives = 128/149 (85.91%), Query Frame = 3
Query:   84 IAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIF 530
            ++GD++KLPS A +FF          +DDDS  T+WAVL+AGS+G+WNYRHQAD+CHAYQLL+KGG+K+ENI+VFMYDDIA NEENPRPGVIIN P+G+DVY GVPKDYTG++V V+N  AVILGNKTAL GGSGKVVDSGPNDHIFI+
Sbjct:   18 VSGDVIKLPSLASKFFR------PTENDDDS--TKWAVLVAGSSGYWNYRHQADVCHAYQLLKKGGVKEENIVVFMYDDIAKNEENPRPGVIINSPNGEDVYNGVPKDYTGDEVNVDNLLAVILGNKTALKGGSGKVVDSGPNDHIFIY 158          
BLAST of CX287433 vs. ExPASy Swiss-Prot
Match: VPE_RICCO (Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 2.685e-54
Identity = 97/123 (78.86%), Postives = 110/123 (89.43%), Query Frame = 3
Query:  162 DDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIF 530
            DDDD +GTRWAVL+AGS GF NYRHQAD+CHAYQLLRKGGLK+ENIIVFMYDDIA NE NPRPGVIINHP G+DVY GVPKDYTGE VT +N +AV+LG+K+A+ GGSGKVVDS PND IF++
Sbjct:   54 DDDDQLGTRWAVLVAGSMGFGNYRHQADVCHAYQLLRKGGLKEENIIVFMYDDIAKNELNPRPGVIINHPQGEDVYAGVPKDYTGEHVTAKNLYAVLLGDKSAVQGGSGKVVDSKPNDRIFLY 176          
BLAST of CX287433 vs. ExPASy Swiss-Prot
Match: LEGU_CANEN (Legumain OS=Canavalia ensiformis PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 2.513e-52
Identity = 93/121 (76.86%), Postives = 106/121 (87.60%), Query Frame = 3
Query:  168 DDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIF 530
            DD VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGG+K+ENI+VFMYDDIA+N  NPRPGVIINHP G DVY GVPKDYTGEDVT EN +AVILG+K+ + GGSGKV++S P D IFIF
Sbjct:   34 DDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIAYNAMNPRPGVIINHPQGPDVYAGVPKDYTGEDVTPENLYAVILGDKSKVKGGSGKVINSNPEDRIFIF 154          
BLAST of CX287433 vs. ExPASy Swiss-Prot
Match: VPE_SOYBN (Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.599e-52
Identity = 100/167 (59.88%), Postives = 123/167 (73.65%), Query Frame = 3
Query:   30 VLITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIF 530
            +++ L+      A  +R     ++KLP+E             V+ D D VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGGLK+ENI+VFMYDDIA NE NPR GVIINHP G+D+Y GVPKDYTG++VT EN FAVILG+K+ L GGSGKV++S P D IFI+
Sbjct:   20 MMVVLVRVHGAAARPNRKEWDSVIKLPTEP------------VDADSDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGLKEENIVVFMYDDIATNELNPRHGVIINHPEGEDLYAGVPKDYTGDNVTTENLFAVILGDKSKLKGGSGKVINSKPEDRIFIY 174          
BLAST of CX287433 vs. ExPASy Swiss-Prot
Match: VPEB_ARATH (Vacuolar-processing enzyme beta-isozyme OS=Arabidopsis thaliana GN=At1g62710 PE=2 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 3.072e-50
Identity = 87/124 (70.16%), Postives = 106/124 (85.48%), Query Frame = 3
Query:  159 NDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIF 530
            + D+D VGTRWAVL+AGS+G+ NYRHQAD+CHAYQ+LRKGGLK+ENI+V MYDDIA +  NPRPG +INHP GDDVY GVPKDYTG  VT  NF+AV+LG++ A+ GGSGKV+ S PNDHIF++
Sbjct:   42 DQDEDGVGTRWAVLVAGSSGYGNYRHQADVCHAYQILRKGGLKEENIVVLMYDDIANHPLNPRPGTLINHPDGDDVYAGVPKDYTGSSVTAANFYAVLLGDQKAVKGGSGKVIASKPNDHIFVY 165          
BLAST of CX287433 vs. ExPASy Swiss-Prot
Match: VPE2_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 5.240e-50
Identity = 94/166 (56.63%), Postives = 124/166 (74.70%), Query Frame = 3
Query:   33 LITLLVALAGIADGSRDIAGDILKLPSEAYRFFHNGGGGAKVNDDDDSVGTRWAVLLAGSNGFWNYRHQADICHAYQLLRKGGLKDENIIVFMYDDIAFNEENPRPGVIINHPHGDDVYKGVPKDYTGEDVTVENFFAVILGNKTALTGGSGKVVDSGPNDHIFIF 530
            ++ +++ + G     +D    ++KLP++            +V+ + D VGTRWAVL+AGSNG+ NYRHQAD+CHAYQLL KGG+K+ENI+VFMYDDIA +E NPRPGVIIN+P G DVY GVPKDYTGE VT  NFFAV+LG+K+ + GGSGKV++S P D IF++
Sbjct:   22 MLVMVMRIQGTNGKEQD---SVIKLPTQ------------EVDAESDEVGTRWAVLVAGSNGYGNYRHQADVCHAYQLLIKGGVKEENIVVFMYDDIATHELNPRPGVIINNPQGPDVYAGVPKDYTGESVTSHNFFAVLLGDKSKVKGGSGKVINSKPEDRIFVY 172          
The following BLAST results are available for this feature:
BLAST of CX287433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
VPE_CITSI1.360e-9898.85Vacuolar-processing enzyme OS=Citrus sinensis PE=2... [more]
VPEG_ARATH3.058e-6670.45Vacuolar-processing enzyme gamma-isozyme OS=Arabid... [more]
VPE_VICSA7.532e-6565.90Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV... [more]
VPE1_PHAVU2.679e-6266.47Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPEA_ARATH7.295e-6071.81Vacuolar-processing enzyme alpha-isozyme OS=Arabid... [more]
VPE_RICCO2.685e-5478.86Vacuolar-processing enzyme OS=Ricinus communis PE=... [more]
LEGU_CANEN2.513e-5276.86Legumain OS=Canavalia ensiformis PE=1 SV=1[more]
VPE_SOYBN5.599e-5259.88Vacuolar-processing enzyme OS=Glycine max PE=2 SV=... [more]
VPEB_ARATH3.072e-5070.16Vacuolar-processing enzyme beta-isozyme OS=Arabido... [more]
VPE2_PHAVU5.240e-5056.63Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]

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Properties
Property NameValue
Genbank descriptionC01009E05SK Veg1 Citrus clementina cDNA clone C01009E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287433 ID=CX287433; Name=CX287433; organism=Citrus clementina; type=EST; length=531bp
AAAAAACCATGACGCGCCTTGCCTCCGGCGTGCTAATCACGCTCCTAGTC
GCTCTTGCAGGAATCGCCGATGGAAGCAGAGACATAGCAGGTGACATTCT
GAAGCTACCATCGGAAGCCTATAGGTTCTTCCATAATGGTGGGGGAGGGG
CAAAGGTCAACGATGATGATGATTCTGTCGGCACGAGATGGGCCGTCCTG
CTTGCCGGATCTAATGGCTTCTGGAATTACAGGCATCAGGCTGATATTTG
TCATGCTTATCAACTCTTGAGGAAAGGTGGGCTGAAGGATGAAAATATTA
TTGTTTTCATGTATGATGACATCGCTTTCAATGAAGAGAACCCAAGGCCT
GGAGTCATCATTAACCACCCCCATGGCGATGATGTTTACAAAGGAGTTCC
AAAGGATTACACGGGGGAAGATGTTACTGTTGAAAACTTTTTTGCTGTTA
TCCTGGGAAATAAAACAGCTCTTACAGGGGGCAGTGGGAAGGTTGTGGAT
AGCGGCCCCAATGATCATATTTTCATATTCT
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