CX287438

Overview
NameCX287438
Unique NameCX287438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length619
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287438_ssr113 microsatellite CX287438_ssr113:113..124. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX287438 vs. ExPASy Swiss-Prot
Match: TIM14_BOVIN (Mitochondrial import inner membrane translocase subunit TIM14 OS=Bos taurus GN=DNAJC19 PE=3 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.336e-19
Identity = 47/97 (48.45%), Postives = 66/97 (68.04%), Query Frame = 2
Query:  131 GKYGIRAW--------QAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 397
            G+Y ++A         Q F++ P TA    +Y GGF+P MT+REAALILGV  +    K+++AHRR+M+ NHPD GGS Y+A+KINEAKD++  + K
Sbjct:   19 GRYALQAMKHMEPQVKQVFQSLPKTAFSGGYYRGGFEPKMTKREAALILGVSPTANKAKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAK 115          
BLAST of CX287438 vs. ExPASy Swiss-Prot
Match: TIM14_PONAB (Mitochondrial import inner membrane translocase subunit TIM14 OS=Pongo abelii GN=DNAJC19 PE=3 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  155 QAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 397
            Q F++ P +A    +Y GGF+P MT+REAALILGV  +    K+++AHRR+M+ NHPD GGS Y+A+KINEAKD++  + K
Sbjct:   35 QVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAK 115          
BLAST of CX287438 vs. ExPASy Swiss-Prot
Match: TIM14_HUMAN (Mitochondrial import inner membrane translocase subunit TIM14 OS=Homo sapiens GN=DNAJC19 PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 8.657e-19
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  155 QAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 397
            Q F++ P +A    +Y GGF+P MT+REAALILGV  +    K+++AHRR+M+ NHPD GGS Y+A+KINEAKD++  + K
Sbjct:   35 QVFQSLPKSAFSGGYYRGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAK 115          
BLAST of CX287438 vs. ExPASy Swiss-Prot
Match: TIM14_MOUSE (Mitochondrial import inner membrane translocase subunit TIM14 OS=Mus musculus GN=Dnajc19 PE=2 SV=3)

HSP 1 Score: 92.8189 bits (229), Expect = 1.477e-18
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  155 QAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 397
            Q F++ P +A    +Y GGF+P MT+REAALILGV  +    K+++AHRR+M+ NHPD GGS Y+A+KINEAKD++  + K
Sbjct:   35 QVFQSLPKSAFGGGYYRGGFEPKMTKREAALILGVSPTANKGKIRDAHRRIMLLNHPDKGGSPYIAAKINEAKDLLEGQAK 115          
BLAST of CX287438 vs. ExPASy Swiss-Prot
Match: DJC15_PONAB (DnaJ homolog subfamily C member 15 OS=Pongo abelii GN=DNAJC15 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  131 GKYGIRAWQAFKA-------RPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 397
            G+Y  R W+  +        +  T  +  +Y+GGF+  M+RREA LILGV  S    K++ AHRRVM+ NHPD GGS Y+A+KINEAKD++   TK
Sbjct:   54 GRYAFRIWKPLEQVITETAKKISTPSLSSYYKGGFEKKMSRREAGLILGVSPSAGKAKIRTAHRRVMILNHPDKGGSPYVAAKINEAKDLLETTTK 149          
BLAST of CX287438 vs. ExPASy Swiss-Prot
Match: DJC15_HUMAN (DnaJ homolog subfamily C member 15 OS=Homo sapiens GN=DNAJC15 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 5.611e-18
Identity = 45/96 (46.88%), Postives = 60/96 (62.50%), Query Frame = 2
Query:  131 GKYGIRAWQAFKA-------RPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 397
            G+Y  R W+  +        +  T     +Y+GGF+  M+RREA LILGV  S    K++ AHRRVM+ NHPD GGS Y+A+KINEAKD++   TK
Sbjct:   54 GRYAFRIWKPLEQVITETAKKISTPSFSSYYKGGFEQKMSRREAGLILGVSPSAGKAKIRTAHRRVMILNHPDKGGSPYVAAKINEAKDLLETTTK 149          
BLAST of CX287438 vs. ExPASy Swiss-Prot
Match: DJC15_MOUSE (DnaJ homolog subfamily C member 15 OS=Mus musculus GN=Dnajc15 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.785e-17
Identity = 45/99 (45.45%), Postives = 65/99 (65.66%), Query Frame = 2
Query:  131 GKYGIRAWQAFKARPPTARMRK--------FYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGS 403
            G+Y  + W+  + +  TA  RK        +Y+GGF+  M++REA+LILGV  S    K++ AH+R+M+ NHPD GGS YLASKINEAKD++   +K +
Sbjct:   52 GRYAFQIWKPLE-QVITATARKISSPSFSSYYKGGFEQKMSKREASLILGVSPSAGKAKIRTAHKRIMILNHPDKGGSPYLASKINEAKDLLEASSKAN 149          
BLAST of CX287438 vs. ExPASy Swiss-Prot
Match: TIM14_DANRE (Mitochondrial import inner membrane translocase subunit TIM14 OS=Danio rerio GN=dnajc19 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.204e-17
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  131 GKYGIRAWQAFKARPPTARMRK-------FYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 382
            G+Y +RA +  + +   A           +Y GGF P M RREA+LILGV  +    K++EAHR++M+ NHPD GGS YLA+KINEAKD++
Sbjct:   19 GRYAVRAMKHMEPQVKQALEASKSAFGSGYYRGGFDPKMNRREASLILGVSPTANKTKIREAHRKLMILNHPDRGGSPYLAAKINEAKDLL 109          
BLAST of CX287438 vs. ExPASy Swiss-Prot
Match: TIM14_DROME (Mitochondrial import inner membrane translocase subunit TIM14 OS=Drosophila melanogaster GN=Tim14 PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.382e-16
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  194 KFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 382
            K+Y+GGF P M +REA+LILGV  S    K+K+AH+++M+ NHPD GGS YLA+KINEAKD +
Sbjct:   52 KYYKGGFDPKMNKREASLILGVSPSASKIKIKDAHKKIMLLNHPDRGGSPYLAAKINEAKDFL 114          
BLAST of CX287438 vs. ExPASy Swiss-Prot
Match: TIM14_CAEBR (Mitochondrial import inner membrane translocase subunit TIM14 OS=Caenorhabditis briggsae GN=dnj-21 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.382e-16
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 2
Query:  155 QAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 382
            +  +A P    +  +Y GGF   M+R EAA ILG+  S    K+K+AH++VM+ NHPD GGS YLA+KINEAKD+M
Sbjct:   31 KGMEALPVAGGLNSYYRGGFDQKMSRSEAAKILGITPSAKPAKIKDAHKKVMIVNHPDRGGSPYLAAKINEAKDLM 106          
The following BLAST results are available for this feature:
BLAST of CX287438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
TIM14_BOVIN1.336e-1948.45Mitochondrial import inner membrane translocase su... [more]
TIM14_PONAB8.657e-1953.09Mitochondrial import inner membrane translocase su... [more]
TIM14_HUMAN8.657e-1953.09Mitochondrial import inner membrane translocase su... [more]
TIM14_MOUSE1.477e-1853.09Mitochondrial import inner membrane translocase su... [more]
DJC15_PONAB3.290e-1846.88DnaJ homolog subfamily C member 15 OS=Pongo abelii... [more]
DJC15_HUMAN5.611e-1846.88DnaJ homolog subfamily C member 15 OS=Homo sapiens... [more]
DJC15_MOUSE2.785e-1745.45DnaJ homolog subfamily C member 15 OS=Mus musculus... [more]
TIM14_DANRE6.204e-1747.25Mitochondrial import inner membrane translocase su... [more]
TIM14_DROME1.382e-1660.32Mitochondrial import inner membrane translocase su... [more]
TIM14_CAEBR1.382e-1651.32Mitochondrial import inner membrane translocase su... [more]

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Properties
Property NameValue
Genbank descriptionC01009E10SK Veg1 Citrus clementina cDNA clone C01009E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287438 ID=CX287438; Name=CX287438; organism=Citrus clementina; type=EST; length=619bp
GCAAAACCCTAAAGCCCAGGGTCGTCAACTGTTCCTGCCCATTTTTTTCG
CTCTCTGAGATATTTTGAACATGTCGAATCAGGTTGCACCATTGATAGCG
GGAATGGCAGTCGCTGCTGCTGCTTATGCTGGTAAGTATGGCATCAGGGC
CTGGCAGGCATTCAAGGCAAGACCGCCGACAGCTAGAATGCGGAAATTTT
ACGAAGGTGGTTTTCAGCCTGTGATGACGAGGAGGGAAGCGGCTCTGATA
CTTGGAGTCAGAGAAAGTACTCCAACAGAGAAGGTCAAAGAAGCTCATAG
AAGAGTGATGGTAGCAAACCATCCAGATGCAGGTGGTAGCCATTACCTGG
CATCTAAAATTAATGAAGCTAAAGATATAATGCTCAGAAGAACCAAAGGC
AGCAATTCTGCATTTTAGTCAGACTATCCCAATCTCTGTGGGGCTAATTC
GTAAAAGCTCTGGGAGTTGAGTTTGGAAAGTCAAATCCCCGGAGTAATTA
TTCATATGATTCTTTCAGACCATTATTGTGCACTGCATGGAAAATCTGAA
TATATTTTTTTTTTACTTGAATAAATCAGTTGAGTTGAGGGAAACTTTTT
GTATCGGGTTCTATATTAG
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