CX287440

Overview
NameCX287440
Unique NameCX287440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14593 contig Ccv1_Contig14593:82..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.085e-78
Identity = 141/181 (77.90%), Postives = 157/181 (86.74%), Query Frame = 3
Query:   30 MAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVH 572
            MA+EICVKAAVGAPD LGDCPFSQRALLTLEEK + YK HLIN+SDKPQWFL+ISP+GKVPV+K DDKWV DSDVIV I+EEKYP+P L  P EFASVGS IF +F  FLKSKD NDG+E ALL EL+AL+ HLK+H GPFIAGE+V+AVDLSLAPKLYHLQVAL HFK W+VPES  HVH
Sbjct:    1 MALEICVKAAVGAPDHLGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVH 181          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC1_HUMAN (Chloride intracellular channel protein 1 OS=Homo sapiens GN=CLIC1 PE=1 SV=4)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 58/202 (28.71%), Postives = 100/202 (49.50%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVH 572
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVH 207          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC1_RAT (Chloride intracellular channel protein 1 OS=Rattus norvegicus GN=Clic1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.306e-15
Identity = 58/202 (28.71%), Postives = 99/202 (49.01%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVH 572
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVH 207          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC1_MOUSE (Chloride intracellular channel protein 1 OS=Mus musculus GN=Clic1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.306e-15
Identity = 58/202 (28.71%), Postives = 99/202 (49.01%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEE-----KYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVH 572
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAMLCPPRYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVH 207          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC6_HUMAN (Chloride intracellular channel protein 6 OS=Homo sapiens GN=CLIC6 PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 2.909e-15
Identity = 55/208 (26.44%), Postives = 100/208 (48.08%), Query Frame = 3
Query:   12 SLNSAKMAVEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHV 569
            +L  +++A++  ++A      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E+ LL+ L+ LD +L +                 G  F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +
Sbjct:  463 ALGCSRIAIKKYLRAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLAPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIHEKNLLKALRKLDNYLNSPLPDEIDAYSTEDVTVSGRKFLDGDELTLADCNLLPKLHIIKIVAKKYRDFEFPSEMTGI 669          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC6_RABIT (Chloride intracellular channel protein 6 OS=Oryctolagus cuniculus GN=CLIC6 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.482e-15
Identity = 56/200 (28.00%), Postives = 93/200 (46.50%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPS----LTNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHV 569
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD     D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E++LL+ LK LD +L +                 G  F+ G+ +T  D +L PKL+ +++  + ++ +  P  +  +
Sbjct:  404 ITLFVKAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGDVKTDVNKIEEFLEEKLAPPRYPKLATQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKSLLKALKKLDAYLNSPLPDEVDAYSTEDVAVSGRKFLDGDDLTLADCNLLPKLHIIKIVAKKYRDFEFPPEMTGI 602          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC1_BOVIN (Chloride intracellular channel protein 1 OS=Bos taurus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.106e-14
Identity = 56/202 (27.72%), Postives = 99/202 (49.01%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVH 572
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  N PE  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +++P+    VH
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVQKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALN-PESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPDEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFSIPDVFRGVH 207          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC1_RABIT (Chloride intracellular channel protein 1 OS=Oryctolagus cuniculus GN=CLIC1 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.444e-14
Identity = 58/202 (28.71%), Postives = 98/202 (48.51%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIE-----EKYPEPSLTNPPEFASVGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVH 572
            VE+ VKA      I G+CPFSQR  + L  K V +    ++   + +   ++ P G++P + +  +   D++ I   +E      +YP+ +  N PE  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  +  + +T+PE    VH
Sbjct:    8 VELFVKAGSDGAKI-GNCPFSQRLFMVLWLKGVTFNVTTVDTKRRTETVHKLCPGGQLPFLLYGTEVHTDTNKIEEFLEAVLCPPRYPKLAALN-PESNTAGVDIFAKFSAYIKNSNPALNDNLEKGLLKALKILDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKNRGFTIPEVFRGVH 207          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC6_RAT (Chloride intracellular channel protein 6 OS=Rattus norvegicus GN=Clic6 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.217e-14
Identity = 56/200 (28.00%), Postives = 92/200 (46.00%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHV 569
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD ND  E+ LL  LK LD +L +                    F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +
Sbjct:  379 ITLFVKAGSDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANDIYEKNLLRALKKLDSYLNSPLPDEIDAYSTEDVTVSQRKFLDGDELTLADCNLLPKLHIIKIVAKKYRGFEFPSEMTGI 577          
BLAST of CX287440 vs. ExPASy Swiss-Prot
Match: CLIC6_MOUSE (Chloride intracellular channel protein 6 OS=Mus musculus GN=Clic6 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.201e-14
Identity = 55/200 (27.50%), Postives = 92/200 (46.00%), Query Frame = 3
Query:   36 VEICVKAAVGAPDILGDCPFSQRALLTLEEKKVPYKRHLINISDKPQWFLEISPEGKVPVVKFDDKWVADSDVIVRIIEEKYPEPSL----TNPPEFASVGSKIFPSFVNFLKS--KDPNDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHV 569
            + + VKA      I G+CPFSQR  + L  K V +    +++  KP     ++P    P + FD +   D + I   +EEK   P      T  PE  S G+ +F  F  F+K+  KD N+  E+ LL  LK LD +L +                    F+ G+++T  D +L PKL+ +++  + ++ +  P  +  +
Sbjct:  363 ITLFVKAGYDGESI-GNCPFSQRLFMILWLKGVIFNVTTVDLKRKPADLQNLAPGTNPPFMTFDGEVKTDVNKIEEFLEEKLVPPRYPKLGTQHPESNSAGNDVFAKFSAFIKNTKKDANEIYEKNLLRALKKLDSYLNSPLPDEIDADSSEDVTVSQRKFLDGDELTLADCNLLPKLHIIKIVAKKYRDFEFPSEMTGI 561          
The following BLAST results are available for this feature:
BLAST of CX287440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DHAR1_ARATH1.085e-7877.90Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
CLIC1_HUMAN7.656e-1628.71Chloride intracellular channel protein 1 OS=Homo s... [more]
CLIC1_RAT1.306e-1528.71Chloride intracellular channel protein 1 OS=Rattus... [more]
CLIC1_MOUSE1.306e-1528.71Chloride intracellular channel protein 1 OS=Mus mu... [more]
CLIC6_HUMAN2.909e-1526.44Chloride intracellular channel protein 6 OS=Homo s... [more]
CLIC6_RABIT6.482e-1528.00Chloride intracellular channel protein 6 OS=Orycto... [more]
CLIC1_BOVIN1.106e-1427.72Chloride intracellular channel protein 1 OS=Bos ta... [more]
CLIC1_RABIT1.444e-1428.71Chloride intracellular channel protein 1 OS=Orycto... [more]
CLIC6_RAT3.217e-1428.00Chloride intracellular channel protein 6 OS=Rattus... [more]
CLIC6_MOUSE4.201e-1427.50Chloride intracellular channel protein 6 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionC01009E12SK Veg1 Citrus clementina cDNA clone C01009E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287440 ID=CX287440; Name=CX287440; organism=Citrus clementina; type=EST; length=577bp
ACTCTCTCTGATCACTCAATTCCGCAAAAATGGCCGTGGAGATTTGTGTG
AAAGCCGCTGTTGGCGCTCCTGATATTCTCGGGGACTGCCCATTTTCCCA
AAGAGCTTTGCTTACTTTGGAGGAAAAGAAAGTTCCATACAAGCGTCACC
TCATCAATATCAGTGACAAGCCTCAATGGTTTTTGGAGATAAGCCCAGAA
GGGAAAGTACCTGTGGTAAAGTTTGATGACAAGTGGGTGGCTGACTCTGA
TGTGATTGTTAGAATTATTGAGGAGAAGTATCCTGAGCCTTCTCTTACTA
ATCCTCCTGAATTTGCCTCTGTTGGATCAAAGATATTCCCATCTTTTGTC
AATTTCTTGAAGAGCAAGGACCCAAATGATGGGACAGAGCAAGCTTTGCT
GGAGGAATTGAAAGCATTGGATGAGCATCTTAAGACTCATGGAGGTCCAT
TCATTGCTGGAGAGAAGGTCACTGCTGTAGATTTGAGCTTGGCACCAAAG
CTGTACCACCTTCAGGTAGCTCTTGAACATTTCAAGCAGTGGACTGTCCC
TGAGAGCTTGGCTCATGTCCATGGGTA
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