CX287444

Overview
NameCX287444
Unique NameCX287444
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6953 contig Ccv1_Contig6953:4..501. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287444 vs. ExPASy Swiss-Prot
Match: MFTC_MOUSE (Mitochondrial folate transporter/carrier OS=Mus musculus GN=Slc25a32 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.158e-19
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  217 MHPLDVVRTRFQVNDGRVSNLPTYKSTAHAILTISRSEGLRGLYAGFSPAVLGSTLSWGLYFFFYGRAKQRYSKNGKEKLNPGHHLASSAEAGA 498
            +HPLD+V+ RF V+DG +   P YK   H + TI + +GLRGLY G +P V G+ LSWGLYFFFY   K   ++   E+L P  +L S+AEAGA
Sbjct:   40 LHPLDLVKIRFAVSDG-LEVRPKYKGILHCLATIWKVDGLRGLYQGVTPNVWGAGLSWGLYFFFYNAIKSYKTEGRAEQLEPLEYLVSAAEAGA 132          
BLAST of CX287444 vs. ExPASy Swiss-Prot
Match: MFTC_MACFA (Mitochondrial folate transporter/carrier OS=Macaca fascicularis GN=SLC25A32 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 4.597e-18
Identity = 51/127 (40.16%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  139 SESKSGQW-------QWENXXXXXXXXXXXXXXMHPLDVVRTRFQVNDGRVSNLPTYKSTAHAILTISRSEGLRGLYAGFSPAVLGSTLSWGLYFFFYGRAKQRYSKNGKEKLNPGHHLASSAEAGA 498
            S S S  W       ++EN              +HPLD+V+ RF V+DG +   P Y    H + TI + +GLRGLY G +P V G+ LSWGLYFFFY   K   ++   E+L    +L S+AEAGA
Sbjct:    7 SASGSSAWSTVFRHVRYENLVAGVSGGVLSNLALHPLDLVKIRFAVSDG-LELRPKYNGILHCLTTIWKLDGLRGLYQGVTPNVWGAGLSWGLYFFFYNAIKSYKTEGRAERLEATEYLVSAAEAGA 132          
BLAST of CX287444 vs. ExPASy Swiss-Prot
Match: MFTC_HUMAN (Mitochondrial folate transporter/carrier OS=Homo sapiens GN=SLC25A32 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.004e-18
Identity = 50/127 (39.37%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  139 SESKSGQW-------QWENXXXXXXXXXXXXXXMHPLDVVRTRFQVNDGRVSNLPTYKSTAHAILTISRSEGLRGLYAGFSPAVLGSTLSWGLYFFFYGRAKQRYSKNGKEKLNPGHHLASSAEAGA 498
            S S S  W       ++EN              +HPLD+V+ RF V+DG +   P Y    H + TI + +GLRGLY G +P + G+ LSWGLYFFFY   K   ++   E+L    +L S+AEAGA
Sbjct:    7 SASGSSAWSTVFRHVRYENLIAGVSGGVLSNLALHPLDLVKIRFAVSDG-LELRPKYNGILHCLTTIWKLDGLRGLYQGVTPNIWGAGLSWGLYFFFYNAIKSYKTEGRAERLEATEYLVSAAEAGA 132          
The following BLAST results are available for this feature:
BLAST of CX287444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MFTC_MOUSE4.158e-1950.00Mitochondrial folate transporter/carrier OS=Mus mu... [more]
MFTC_MACFA4.597e-1840.16Mitochondrial folate transporter/carrier OS=Macaca... [more]
MFTC_HUMAN6.004e-1839.37Mitochondrial folate transporter/carrier OS=Homo s... [more]
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Properties
Property NameValue
Genbank descriptionC01009F04SK Veg1 Citrus clementina cDNA clone C01009F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287444 ID=CX287444; Name=CX287444; organism=Citrus clementina; type=EST; length=498bp
CTGCAGGAATCTCGGCACGAGGGGAAGGAGCAACGGACAAATCCCTGCCC
TCAGCCTCAGCCTCAGGCTCAGCGCAAGTTAGTGAAATGAATCCTGCTCT
TCCGGACTCCATTTCAGTCTCTTATTGAATAAATCATGTCAGAGTCAAAG
TCAGGACAATGGCAATGGGAAAATGCCACTGCCGGCGCCATTGCAGGCTT
CGCCACAGTCGCGGCTATGCACCCCCTCGACGTCGTCCGTACTAGGTTCC
AAGTTAACGATGGTCGAGTATCGAATCTCCCAACTTACAAGAGCACGGCT
CATGCTATTTTAACCATTTCTCGCTCGGAGGGTCTGAGAGGGCTTTATGC
TGGCTTTTCTCCTGCAGTTCTTGGCTCAACTCTTTCTTGGGGTTTATATT
TCTTCTTTTATGGCAGAGCCAAGCAAAGGTATTCTAAAAATGGGAAGGAA
AAGCTGAACCCTGGTCATCATCTAGCTTCTTCTGCTGAAGCTGGAGCT
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