CX287446

Overview
NameCX287446
Unique NameCX287446
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length516
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2903 contig Ccv1_Contig2903:500..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX287446 vs. ExPASy Swiss-Prot
Match: CML35_ARATH (Probable calcium-binding protein CML35 OS=Arabidopsis thaliana GN=CML35 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.656e-13
Identity = 53/124 (42.74%), Postives = 64/124 (51.61%), Query Frame = 1 
Query:  142 IEKLSPKRLFRSKSKKXXXXXXXXXXXXXXXXXXXXXXXHNKLGSAPDRVGTPTSVLHEISGDWSDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD 513
            + +LSPKRLFR+KSK                         N L   P    TP SVL + SGD+             ELVQA KL+DRD+DGVV R +L AL+ RL  +PP+QEEV  ML EVD
Sbjct:    7 LNRLSPKRLFRTKSKASVSRSEPSSFSSNASSSSSDGSYGN-LKQGP--TATPISVLPQNSGDFYT-----------ELVQAFKLIDRDDDGVVSRGDLAALISRLSHEPPSQEEVSLMLREVD 116
[Close]
BLAST of CX287446 vs. ExPASy Swiss-Prot
Match: CML36_ARATH (Probable calcium-binding protein CML36 OS=Arabidopsis thaliana GN=CML36 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.186e-11
Identity = 45/124 (36.29%), Postives = 58/124 (46.77%), Query Frame = 1 
Query:  142 IEKLSPKRLFRSKSKKXXXXXXXXXXXXXXXXXXXXXXXHNKLGSAPDRVGTPTSVLHEISGDWSDMSADISLDMNYELVQACKLLDRDNDGVVLRSELEALLIRLGADPPTQEEVKSMLSEVD 513
            + KL PKR F     +                        N  G       TPTS+L E+   +S +          E++QA KL+DRDNDG V R +LE+LL RLG DP T+EE+  ML EVD
Sbjct:    3 LAKLIPKRFFIRSKDRSTVSKSPTAFSFGSASSSSGQDCKNSGGDGGGGSVTPTSILPEVPSPYSYV----------EILQAFKLIDRDNDGAVSRHDLESLLSRLGPDPLTEEEINVMLKEVD 116
The following BLAST results are available for this feature:
BLAST of CX287446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CML35_ARATH1.656e-1342.74Probable calcium-binding protein CML35 OS=Arabidop... [more]
CML36_ARATH1.186e-1136.29Probable calcium-binding protein CML36 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionC01009F06SK Veg1 Citrus clementina cDNA clone C01009F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287446 ID=CX287446; Name=CX287446; organism=Citrus clementina; type=EST; length=516bp
CCACACTCCCTCCATTTAACGCTCAACCGCCCTCTCCCTTCCCGTTCAAT
TCATTCCCCCTTCTCCTTCTCTTTCCTCTTTTTCCCTTCACGAGAAACTC
GAATTCGTCTTTTTTTTCTTCGCGTTTCGGAAATGAAACTCATCGAGAAG
CTCAGCCCGAAACGTCTCTTCCGGTCCAAGTCCAAGAAGGACCGGACCAG
CGTTTCGCGTTCTGACCCATCATCGTTCAGCTCGTCCTCTACCTCCGACT
CGTCCACCCACAACAAACTCGGTTCGGCGCCGGACAGAGTCGGGACGCCA
ACGAGTGTCTTACACGAGATATCGGGTGACTGGTCCGACATGTCGGCCGA
TATCTCGCTAGATATGAACTACGAGCTCGTCCAGGCGTGTAAGTTGCTCG
ACAGGGACAACGACGGGGTGGTGTTGAGAAGCGAGCTGGAGGCGCTCTTG
ATCCGGCTCGGAGCGGACCCGCCGACCCAAGAGGAGGTCAAGTCGATGCT
GAGCGAGGTGGATCGG
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