CX287451

Overview
NameCX287451
Unique NameCX287451
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length621
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.474e-22
Identity = 61/122 (50.00%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAG-------YSSLQLLKIVQRQLEGPNFEQFT 375
            MGR  +QL+RIENK   QVTFSKRR+GL+KKA E+SVLCD D+AL++FS++G+LYEF S  S+  ILERYQ R + +  A   P  ED +          S L  L+  QRQL G   +  T
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQ-RYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLT 121          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 6.474e-22
Identity = 61/122 (50.00%), Postives = 78/122 (63.93%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAG-------YSSLQLLKIVQRQLEGPNFEQFT 375
            MGR  +QL+RIENK   QVTFSKRR+GL+KKA E+SVLCD D+AL++FS++G+LYEF S  S+  ILERYQ R + +  A   P  ED +          S L  L+  QRQL G   +  T
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQ-RYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLT 121          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.196e-21
Identity = 58/114 (50.88%), Postives = 79/114 (69.30%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQA---GYSS-LQLLKIVQRQLEGPN 360
            MGRKKL+++RIENKS  QVTFSKRR+GLI+KAR+LSVLCD  +AL++ S+ G+LY F S D+L  IL+RY  +  ++       KA D Q+    Y S  +LL++V  +L G N
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHADDL------KALDHQSKALNYGSHYELLELVDSKLVGSN 108          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.157e-21
Identity = 56/105 (53.33%), Postives = 73/105 (69.52%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGYSSLQ-LLKIVQR 342
            MGR +++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RG+LYEFCS+ S+   LERYQ +    A     P  E      SS Q  LK+ +R
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQ-KCNYGAPEPNVPSREALAVELSSQQEYLKLKER 104          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.157e-21
Identity = 47/71 (66.20%), Postives = 61/71 (85.92%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ 243
            MGR +++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RG+LYEFCS+ S+   LERYQ
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQ 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 47/71 (66.20%), Postives = 60/71 (84.51%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ 243
            MGR +++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RG+LYEFCS  S+   LERYQ
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQ 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.348e-21
Identity = 47/71 (66.20%), Postives = 61/71 (85.92%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQ 243
            MGR +++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RG+LYEFCS+ S+   LERYQ
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQ 71          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.221e-20
Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGYSSLQLLKIVQR 342
            MGR +++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RG+LYEFCS  S+   LE+YQ + +     +     E  Q   S  + LK+  R
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQ-KCSYAGPETAVQNRESEQLKASRNEYLKLKAR 103          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.221e-20
Identity = 52/104 (50.00%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGYSSLQLLKIVQR 342
            MGR +++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL+IFS+RG+LYEFCS  S+   LE+YQ + +     +     E  Q   S  + LK+  R
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQ-KCSYAGPETAVQNRESEQLKASRNEYLKLKAR 103          
BLAST of CX287451 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.221e-20
Identity = 61/161 (37.89%), Postives = 91/161 (56.52%), Query Frame = 1
Query:   31 MGRKKLQLQRIENKSRCQVTFSKRRSGLIKKARELSVLCDVDLALVIFSSRGRLYEFCSADSLASILERYQSRITEEAVASGAPKAEDPQAGYSSLQL------LKIVQRQLEGPNFEQFTAADXXXXXXXXXXXXXXIRAVKV-HSYAHWASLVQTQLMM 492
            MGR +++L+RIENK   QVTF+KRR+GL+KKA ELSVLCD ++AL++FS+RG+LYEFCS   +   LERYQ R +  ++ +  P  E   +    L+L      L+   R L G +  + +  +              IR++K  H     A L + + M+
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQ-RCSYGSLETSQPSKETESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEML 160          
The following BLAST results are available for this feature:
BLAST of CX287451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
MAD18_ORYSJ6.474e-2250.00MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI6.474e-2250.00MADS-box transcription factor 18 OS=Oryza sativa s... [more]
FLC_ARATH4.196e-2150.88MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
SEP3_ARATH7.157e-2153.33Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_PETHY7.157e-2166.20Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
MADS8_ORYSJ9.348e-2166.20MADS-box transcription factor 8 OS=Oryza sativa su... [more]
AGL9_SINAL9.348e-2166.20Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
MADS7_ORYSJ1.221e-2050.00MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI1.221e-2050.00MADS-box transcription factor 7 OS=Oryza sativa su... [more]
CMB1_DIACA1.221e-2037.89MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01009F11SK Veg1 Citrus clementina cDNA clone C01009F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287451 ID=CX287451; Name=CX287451; organism=Citrus clementina; type=EST; length=621bp
TCTCAATCTAGGGCGGCATTGGGTCAGAAAATGGGCCGGAAAAAGCTTCA
ACTGCAGCGAATCGAAAACAAAAGCCGATGTCAAGTAACGTTCTCAAAGC
GGCGTAGCGGATTGATCAAGAAGGCTCGTGAGCTCTCCGTCCTCTGCGAC
GTCGACTTGGCGCTCGTCATCTTCTCCAGCCGCGGTAGGCTTTACGAGTT
CTGTAGCGCCGACAGTTTGGCCAGCATCCTTGAGCGCTACCAGAGTCGCA
TTACAGAGGAAGCTGTAGCTTCAGGAGCACCTAAGGCAGAGGACCCTCAG
GCTGGATATTCGAGCCTGCAACTGCTGAAAATAGTTCAAAGGCAACTTGA
AGGTCCAAACTTTGAGCAGTTCACTGCAGCTGATCTTCTGCAGTTAGAGA
ATCTACTCAACAATACACTGACAGAAATTAGAGCTGTGAAGGTTCATTCC
TATGCTCATTGGGCATCTTTGGTGCAGACACAACTGATGATGGGATCCAT
TAGAACACTCCAAGAGAAGGAAAAGCTGCTGAGAGAAGAGAAAAAGCTTC
TAGAGGGAAAGATTGCAGCAGGGGAGAAGAGTGGTAATGATACAACAGCA
GCGTCTATGGCAACCCTCCCT
back to top