CX287457

Overview
NameCX287457
Unique NameCX287457
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287457 vs. ExPASy Swiss-Prot
Match: ERG19_MOUSE (Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 1.277e-42
Identity = 85/152 (55.92%), Postives = 106/152 (69.74%), Query Frame = 1
Query:    1 KWIMGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIA 456
            +W MG++ +G DS+A Q+  E HW  L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+ VVP+R+ +M   IQ  DF  FAQLT  DSNQFHA CLDT PPI Y+NDTS RII  V R+N   G  +VAYTFDAGPNAV+      +A
Sbjct:  170 EWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHQGQTKVAYTFDAGPNAVIFTLEDTVA 321          
BLAST of CX287457 vs. ExPASy Swiss-Prot
Match: ERG19_RAT (Diphosphomevalonate decarboxylase OS=Rattus norvegicus GN=Mvd PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.412e-41
Identity = 82/152 (53.95%), Postives = 105/152 (69.08%), Query Frame = 1
Query:    1 KWIMGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIA 456
            +W MG++ +G DS+A Q+  E HW  L ++I VVS+ +K T ST GM+ SV TS LL+ RA+ +VP+R+ +M   IQ  DF +FAQLT  DSNQFHA CLDT PPI Y+NDTS RII  V R+N   G  +VAYTFDAGPNAV+      +A
Sbjct:  170 EWQMGEQADGKDSIARQIAPEWHWPQLRVLILVVSAEKKPTGSTVGMQTSVATSTLLKFRAESIVPERMKEMTRCIQEQDFQAFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNAHHGQTKVAYTFDAGPNAVIFTLEDTVA 321          
BLAST of CX287457 vs. ExPASy Swiss-Prot
Match: ERG19_HUMAN (Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 9.150e-41
Identity = 83/152 (54.61%), Postives = 105/152 (69.08%), Query Frame = 1
Query:    1 KWIMGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIA 456
            +W MG++ +G DS+A Q+  E HW +L ++I VVS+ +K T ST GMR SVETS LL+ RA+ VVP R+ +M   I+  DF SFAQLT  DSNQFHA CLDT PPI Y+N  S RII  V R+N   G  +VAYTFDAGPNAV+   +  +A
Sbjct:  169 EWQMGEQADGKDSIARQVAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPARMAEMARCIRERDFPSFAQLTMKDSNQFHATCLDTFPPISYLNAISWRIIHLVHRFNAHHGDTKVAYTFDAGPNAVIFTLDDTVA 320          
BLAST of CX287457 vs. ExPASy Swiss-Prot
Match: ERG19_DANRE (Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.195e-40
Identity = 79/144 (54.86%), Postives = 106/144 (73.61%), Query Frame = 1
Query:    1 KWIMGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL 432
            +W +G++ +G DS+A Q+  E +W +L ++I VVS+ QK   ST+GM  SVETS LL++RA  VVP R+ +M  AI+  DF  F +LT  DSNQFHA+CLDT PPIFY+N+ SH+IIS V R+N+  G  +VAYTFDAGPNAV+
Sbjct:  168 QWKLGEQSDGKDSIAEQVASELYWPELRVLILVVSAEQKSVGSTSGMHTSVETSHLLKYRADAVVPGRMEEMIRAIRLRDFPKFGELTMKDSNQFHAICLDTYPPIFYLNNISHQIISLVHRYNQYYGETRVAYTFDAGPNAVI 311          
BLAST of CX287457 vs. ExPASy Swiss-Prot
Match: ERG19_BOVIN (Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.943e-39
Identity = 78/152 (51.32%), Postives = 104/152 (68.42%), Query Frame = 1
Query:    1 KWIMGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIA 456
            +W MG+  +G DS+A Q+  E HW +L ++I VVS+ +K   ST GM+ SVETS LL+ RA+ +VP R+ +M   I+  +F +F QLT  DSNQFHA CLDT PPI Y++DTS RII  V R+N   G  +VAYTFDAGPNAV+   +  +A
Sbjct:  169 EWQMGERPDGKDSVACQVAPESHWPELRVLILVVSAERKPMGSTAGMQTSVETSALLKFRAEALVPPRMAEMTRCIRERNFQAFGQLTMKDSNQFHATCLDTFPPISYLSDTSRRIIQLVHRFNAHHGQTKVAYTFDAGPNAVVFTLDDTVA 320          
BLAST of CX287457 vs. ExPASy Swiss-Prot
Match: ERG19_DICDI (Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum GN=mvd PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.551e-38
Identity = 72/144 (50.00%), Postives = 102/144 (70.83%), Query Frame = 1
Query:    1 KWIMGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL 432
            KW MG + +GSDS+AVQ+  E HW D+ II+ VV+ ++KETSST GM++S  TS++++ R    VP R+  +EEAI   DF +F  +T  DS+ FH VC  T+PPI+Y+NDTS  I++ + R+N+  GS + AYTFDAGPNA +
Sbjct:  155 KWEMGTKDDGSDSIAVQVQPESHWPDMNIIVLVVNDKKKETSSTDGMQKSAATSVMMKERCAVTVPNRMRDIEEAINKKDFQTFGDITMKDSDDFHEVCATTTPPIYYLNDTSRYIMNLIHRYNKLSGSIKCAYTFDAGPNACI 298          
BLAST of CX287457 vs. ExPASy Swiss-Prot
Match: ERG19_SCHPO (Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe GN=erg19 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 9.469e-38
Identity = 74/143 (51.75%), Postives = 101/143 (70.63%), Query Frame = 1
Query:    4 WIMGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL 432
            W MG+  +G+DS+AVQ+   E+W ++ + + V S+ +K  SST GM+ +V +S L QHR + +VP+RI +M+ AI+  DF +FA+LT  DSNQFHA CLDT PPIFY+NDTS  +I  VE  N + G    AYTFDAGPNAV+
Sbjct:  170 WEMGELHSGADSVAVQVEPVENWPEIRVAVLVASAAKKGVSSTAGMQATVASSTLFQHRIQNIVPQRIQEMKTAIRERDFETFAKLTMTDSNQFHACCLDTFPPIFYLNDTSRAVIRVVENINATAGKTIAAYTFDAGPNAVI 312          
BLAST of CX287457 vs. ExPASy Swiss-Prot
Match: ERG19_ASHGO (Diphosphomevalonate decarboxylase OS=Ashbya gossypii GN=ERG19 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 9.469e-38
Identity = 78/143 (54.55%), Postives = 98/143 (68.53%), Query Frame = 1
Query:    4 WIMGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL 432
            W MG E +GSDS AVQ+ D EHW ++   I VVS+ +K+T ST+GM+++V TS L + R   VVP+R  +M  AI+  DF++FA+LT  DSN FHA CLD+ PPIFYMNDTS RI+      N       VAYTFDAGPNAVL
Sbjct:  142 WEMGAEADGSDSRAVQIADVEHWPEMRAAILVVSADRKDTPSTSGMQQTVHTSDLFKERVATVVPRRYGEMAAAIRARDFATFARLTMQDSNSFHATCLDSFPPIFYMNDTSRRIVKLCHLINEFYNETIVAYTFDAGPNAVL 284          
BLAST of CX287457 vs. ExPASy Swiss-Prot
Match: ERG19_DEBHA (Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii GN=ERG19 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 2.109e-37
Identity = 76/143 (53.15%), Postives = 98/143 (68.53%), Query Frame = 1
Query:    4 WIMGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL 432
            W MG+E NG DS AV++    HW ++   I VVS  +K+T ST+GM+ +V TS L Q R KEVVPKR   M+++I   DF++F  LT  DSN FHAVCLD++PPIFY+NDTS +II  +   N+  G    AYTFDAGPNAV+
Sbjct:  167 WEMGQETNGEDSKAVEVAPLSHWPNMKAAILVVSDDKKDTPSTSGMQTTVATSDLFQWRIKEVVPKRFDDMKDSILRKDFATFGDLTMKDSNSFHAVCLDSTPPIFYLNDTSKKIIKLIHELNKREGKIIAAYTFDAGPNAVI 309          
BLAST of CX287457 vs. ExPASy Swiss-Prot
Match: ERG19_YEAST (Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae GN=ERG19 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 3.978e-36
Identity = 77/143 (53.85%), Postives = 95/143 (66.43%), Query Frame = 1
Query:    4 WIMGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVL 432
            W MGK  +G DS+AVQ+ D   W  +   + VVS  +K+ SST GM+ +V TS L + R + VVPKR   M +AI   DF++FA+ T  DSN FHA CLD+ PPIFYMNDTS RIIS+    N+  G   VAYTFDAGPNAVL
Sbjct:  167 WEMGKAEDGHDSMAVQIADSSDWPQMKACVLVVSDIKKDVSSTQGMQLTVATSELFKERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQFYGETIVAYTFDAGPNAVL 309          
The following BLAST results are available for this feature:
BLAST of CX287457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ERG19_MOUSE1.277e-4255.92Diphosphomevalonate decarboxylase OS=Mus musculus ... [more]
ERG19_RAT1.412e-4153.95Diphosphomevalonate decarboxylase OS=Rattus norveg... [more]
ERG19_HUMAN9.150e-4154.61Diphosphomevalonate decarboxylase OS=Homo sapiens ... [more]
ERG19_DANRE1.195e-4054.86Diphosphomevalonate decarboxylase OS=Danio rerio G... [more]
ERG19_BOVIN2.943e-3951.32Diphosphomevalonate decarboxylase OS=Bos taurus GN... [more]
ERG19_DICDI5.551e-3850.00Diphosphomevalonate decarboxylase OS=Dictyostelium... [more]
ERG19_SCHPO9.469e-3851.75Diphosphomevalonate decarboxylase OS=Schizosacchar... [more]
ERG19_ASHGO9.469e-3854.55Diphosphomevalonate decarboxylase OS=Ashbya gossyp... [more]
ERG19_DEBHA2.109e-3753.15Diphosphomevalonate decarboxylase OS=Debaryomyces ... [more]
ERG19_YEAST3.978e-3653.85Diphosphomevalonate decarboxylase OS=Saccharomyces... [more]
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Properties
Property NameValue
Genbank descriptionC01009G05SK Veg1 Citrus clementina cDNA clone C01009G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287457 ID=CX287457; Name=CX287457; organism=Citrus clementina; type=EST; length=462bp
AAGTGGATAATGGGAAAAGAAGGAAATGGAAGTGACAGCCTTGCAGTTCA
ACTTGTTGATGAAGAGCACTGGAATGATCTTGTTATTATTATTGCTGTGG
TGAGTTCACGGCAGAAGGAAACAAGTAGCACCACAGGAATGCGTGAGAGT
GTTGAAACAAGTTTGCTTTTACAACATAGAGCAAAGGAAGTTGTGCCAAA
ACGGATAGTACAAATGGAAGAAGCCATCCAAAATCATGATTTTTCGTCTT
TTGCACAATTGACCTGTGCTGATAGTAATCAATTTCATGCGGTTTGCTTG
GATACATCTCCCCCAATATTTTACATGAATGATACATCCCACAGAATTAT
CAGCTATGTTGAAAGATGGAATCGTTCCGTGGGATCACCTCAGGTGGCAT
ATACTTTTGATGCTGGGCCTAATGCTGTTCTGATCGCTCGTAATAGAAAG
ATTGCTACCGAA
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