CX287461

Overview
NameCX287461
Unique NameCX287461
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13214 contig Ccv1_Contig13214:14..602. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: HGS_RAT (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Rattus norvegicus GN=Hgs PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.026e-20
Identity = 42/109 (38.53%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  225 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 551
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+ ++ +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: HGS_MOUSE (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Mus musculus GN=Hgs PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 7.026e-20
Identity = 42/109 (38.53%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  225 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 551
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+ ++ +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKELLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: HGS_HUMAN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Homo sapiens GN=HGS PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.199e-19
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3
Query:  225 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 551
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+  + +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: HGS_BOVIN (Hepatocyte growth factor-regulated tyrosine kinase substrate OS=Bos taurus GN=HGS PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.199e-19
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3
Query:  225 MVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAF 551
            ++D+ATS +L+  DW   ++ICD++     QAK  V  IKK++  +N  V L AL ++E+++KNCG  VH  VA K  + E+  + +++ + +V+ KIL LI  W  AF
Sbjct:   11 LLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVSSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 119          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: TM1L2_MOUSE (TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.260e-18
Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  216 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAF 551
            V   +++AT   L   DW +N+EICD++N      KD ++ +KKR+ G+RN +  +LALT+LET +KNCG   H+ VA ++ +   +VKI   K  P T V++K+L LI  W +AF
Sbjct:   13 VGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLSGNRNYREVMLALTVLETCVKNCGHRFHLLVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAF 128          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: TM1L2_HUMAN (TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.952e-18
Identity = 48/116 (41.38%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  216 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAF 551
            V   +++AT   L   DW +N+EICD++N      KD ++ +KKR+ G+RN +  +LALT+LET +KNCG   H+ VA ++ +   +VKI   K  P T V++K+L LI  W +AF
Sbjct:   13 VGQCLEKATDGSLQSEDWTLNMEICDIINETEEGPKDAIRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHILVANRDFIDSVLVKIISPKNNPPTIVQDKVLALIQAWADAF 128          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: TM1L2_XENLA (TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.576e-18
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  216 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAF 551
            V   +++AT   L   DW +N+EICD++N      KD ++ +KKR+ G+RN +  +LALT+LET +KNCG   H+ V  ++ +   +VKI   K  P T V++K+L LI  W +AF
Sbjct:   13 VGQCIEKATDGSLQSEDWTLNMEICDIINETEEGPKDAMRALKKRLNGNRNYREVMLALTVLETCVKNCGHRFHVQVTHRDFIDGILVKIISPKNNPPTIVQDKVLALIQAWADAF 128          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: TOM1_CHICK (Target of Myb protein 1 OS=Gallus gallus GN=TOM1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.589e-18
Identity = 46/116 (39.66%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  216 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK---IARKKPDTHVKEKILILIDTWQEAF 551
            V   ++RAT   L G DW++N+EICD++N      KD  + IKKRI G++N    +LALT+LET +KNCG   H+ VA ++ +  ++    + +  P   V +K+L LI +W +AF
Sbjct:   13 VGQRIERATDGSLRGEDWSLNMEICDIINETEEGPKDAFRAIKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHILVASQDFVESVLVRTILPKNNPPAIVHDKVLTLIQSWADAF 128          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: TOM1_HUMAN (Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.465e-17
Identity = 45/116 (38.79%), Postives = 72/116 (62.07%), Query Frame = 3
Query:  216 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK---IARKKPDTHVKEKILILIDTWQEAF 551
            V   +++AT   L   DWA+N+EICD++N      KD ++ +KKRI G++N    +LALT+LET +KNCG   H+ VA ++ +  ++    + +  P T V +K+L LI +W +AF
Sbjct:   13 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 128          
BLAST of CX287461 vs. ExPASy Swiss-Prot
Match: TOM1_MOUSE (Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.499e-17
Identity = 45/116 (38.79%), Postives = 71/116 (61.21%), Query Frame = 3
Query:  216 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVK---IARKKPDTHVKEKILILIDTWQEAF 551
            V   +++AT   L   DWA+N+EICD++N      KD  + +KKRI G++N    +LALT+LET +KNCG   H+ VA ++ +  ++    + +  P T V +K+L LI +W +AF
Sbjct:   13 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDAFRAVKKRIMGNKNFHEVMLALTVLETCVKNCGHRFHVLVANQDFVENVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 128          
The following BLAST results are available for this feature:
BLAST of CX287461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
HGS_RAT7.026e-2038.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_MOUSE7.026e-2038.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_HUMAN1.199e-1938.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
HGS_BOVIN1.199e-1938.53Hepatocyte growth factor-regulated tyrosine kinase... [more]
TM1L2_MOUSE2.260e-1841.38TOM1-like protein 2 OS=Mus musculus GN=Tom1l2 PE=1... [more]
TM1L2_HUMAN2.952e-1841.38TOM1-like protein 2 OS=Homo sapiens GN=TOM1L2 PE=1... [more]
TM1L2_XENLA6.576e-1840.52TOM1-like protein 2 OS=Xenopus laevis GN=tom1l2 PE... [more]
TOM1_CHICK8.589e-1839.66Target of Myb protein 1 OS=Gallus gallus GN=TOM1 P... [more]
TOM1_HUMAN1.465e-1738.79Target of Myb protein 1 OS=Homo sapiens GN=TOM1 PE... [more]
TOM1_MOUSE2.499e-1738.79Target of Myb protein 1 OS=Mus musculus GN=Tom1 PE... [more]

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Properties
Property NameValue
Genbank descriptionC01009G09SK Veg1 Citrus clementina cDNA clone C01009G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287461 ID=CX287461; Name=CX287461; organism=Citrus clementina; type=EST; length=589bp
GTTTTAGAGAGAGAAAGTGGGAGAAAAAGAGAGATAATATCAATACTGTT
CGATTTAATTGATCGAGAAAGAGATAAATCTTTTCGTTACCGGAATATCC
GGTGGCATAACGGTAATTAGTTGCGATCTCGGAGCCGGAATCGGAGTGAT
CTTCTTGGAGAGGTGTTTGATTTGATTCGTTTGTTTGGTTGGGAGAGAGT
GAGAGAGCAGAGATGGTGAATTCAATGGTGGATAGAGCCACGAGCGACAT
GTTGATCGGCCCTGATTGGGCCATGAACATCGAGATCTGTGACATGCTCA
ATCACGACCCTGGGCAAGCAAAGGATGTTGTTAAAGGTATTAAAAAGCGT
ATTGGAAGTAGGAATTCAAAAGTTCAACTTCTTGCTTTAACACTGTTGGA
GACAATTATAAAGAATTGTGGGGATATTGTCCATATGCATGTTGCAGAGA
AAAATGTTCTTCATGAGATGGTGAAAATAGCCAGGAAAAAGCCCGACACT
CACGTCAAAGAGAAGATATTAATTCTAATAGATACTTGGCAAGAAGCTTT
CGGAGGACCTAGGGCAAGATATCCACAGTACTATGCGGC
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