CX287464

Overview
NameCX287464
Unique NameCX287464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length560
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig53 contig Ccv1_Contig53:1..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287464 vs. ExPASy Swiss-Prot
Match: AGO4B_ORYSJ (Protein argonaute 4B OS=Oryza sativa subsp. japonica GN=AGO4B PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 5.734e-45
Identity = 87/146 (59.59%), Postives = 110/146 (75.34%), Query Frame = 1
Query:  127 VEEQEPAKK--KVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPY 558
            VE + PA K  K  R P++R GLG +GQ I LL NH+KV+V + E +F+HY+V + YED RPVDGKG GRKVID++Q+TY +EL  KDFAYDGEKSLFT+G LP+   EFTVVLED+S+ +   N SP  + SP G+DRKR+RRPY
Sbjct:   29 VESEVPANKPAKPKRFPMARPGLGRKGQPIQLLANHYKVSVKSSEEYFFHYNVILKYEDDRPVDGKGVGRKVIDKLQQTYRSELSSKDFAYDGEKSLFTIGALPQVTNEFTVVLEDVSTGKTAANGSPGGNDSPGGSDRKRVRRPY 174          
BLAST of CX287464 vs. ExPASy Swiss-Prot
Match: AGO4A_ORYSJ (Protein argonaute 4A OS=Oryza sativa subsp. japonica GN=AGO4A PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.047e-38
Identity = 77/135 (57.04%), Postives = 100/135 (74.07%), Query Frame = 1
Query:  154 KVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKRLRRPY 558
            K  R  ++R G G +GQ I LLTNHFKV++   +  F+HY V++ YED RPVDGKG GRKV+D++Q+TY +EL  KDFAYDGEKSLFT+G LP+   EFTVVLED ++ +++ N     + SP GNDRKR+RRPY
Sbjct:   34 KPKRALMARSGCGKKGQPIQLLTNHFKVSLKAADEFFHHYYVNLKYEDDRPVDGKGIGRKVLDKLQQTYASELANKDFAYDGEKSLFTIGALPQVNNEFTVVLEDFNTGKSSANGGSPGNDSP-GNDRKRVRRPY 167          
BLAST of CX287464 vs. ExPASy Swiss-Prot
Match: AGO15_ORYSJ (Protein argonaute 15 OS=Oryza sativa subsp. japonica GN=AGO15 PE=2 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 5.198e-38
Identity = 77/146 (52.74%), Postives = 105/146 (71.92%), Query Frame = 1
Query:  130 EEQEPAK--KKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSN--RNNGNASPDAHGSPNGNDRKRLRRP 555
            +E EP+   K   ++P+SR+G G+RGQ I LLTNHF+V+V  ++GHFYHY V V YEDG PV+ KG  R+V+D++QETY +EL G++FAY+GEK LFT G L + K +F VV+ED SS+       +S    GSP G+DRKR++RP
Sbjct:    6 DEGEPSAMAKPPKKLPMSRKGFGTRGQSIQLLTNHFRVSVRRMDGHFYHYHVEVKYEDGGPVEAKGVCRRVVDKLQETYASELAGREFAYNGEKGLFTAGALLQTKHQFVVVMEDASSSGRTTTRRSSGGDDGSPGGSDRKRMKRP 151          
BLAST of CX287464 vs. ExPASy Swiss-Prot
Match: AGO16_ORYSJ (Protein argonaute 16 OS=Oryza sativa subsp. japonica GN=AGO16 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 4.865e-36
Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = 1
Query:  157 VVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETYNAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASPDAHGSPNGNDRKR 543
            V RVPI+R   G  G++I LL+NHF V ++ ++  FY YSVS+  ED + +DGKG GRKV+D+V +TY++EL GK+FAYDGEK LFTVGPLP+N  EFTV+LE+ SS    G+     HGSPN  D+KR
Sbjct:   17 VKRVPIARPSFGREGKQIKLLSNHFTVKLSGIDAVFYQYSVSIKSEDDKVIDGKGIGRKVMDKVLQTYSSELAGKEFAYDGEKCLFTVGPLPQNNFEFTVILEETSSRAAGGSL---GHGSPNQGDKKR 142          
BLAST of CX287464 vs. ExPASy Swiss-Prot
Match: AGOL_ARATH (Argonaute-like protein At2g27880 OS=Arabidopsis thaliana GN=At2g27880 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.431e-13
Identity = 52/151 (34.44%), Postives = 76/151 (50.33%), Query Frame = 1
Query:  142 PAKKKVVRVPISRRGLGSRGQRISLLTNHFKVNVTNVEGHFYHYSVSVSYEDGRPVDGKGAGRKVIDRVQETY-NAELDGKDFAYDGEKSLFTVGPLPRNKLEFTVVLEDISSNRNNGNASP-----------DAHGSPNGNDRKRLRRPY 558
            PA  K V  P+ R G G+ G+++ +  NHF V V + +   YHY VS++ E    V  K   R V+  + + Y ++ L GK  AYDG KSL+T GPLP +  EF V L +  ++ ++G   P           D +      DRK+   PY
Sbjct:  139 PASSKAVTFPV-RPGRGTLGKKVMVRANHFLVQVADRD--LYHYDVSINPE----VISKTVNRNVMKLLVKNYKDSHLGGKSPAYDGRKSLYTAGPLPFDSKEFVVNLAEKRADGSSGKDRPFKVAVKNVTSTDLYQLQQFLDRKQREAPY 282          
The following BLAST results are available for this feature:
BLAST of CX287464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
AGO4B_ORYSJ5.734e-4559.59Protein argonaute 4B OS=Oryza sativa subsp. japoni... [more]
AGO4A_ORYSJ1.047e-3857.04Protein argonaute 4A OS=Oryza sativa subsp. japoni... [more]
AGO15_ORYSJ5.198e-3852.74Protein argonaute 15 OS=Oryza sativa subsp. japoni... [more]
AGO16_ORYSJ4.865e-3655.81Protein argonaute 16 OS=Oryza sativa subsp. japoni... [more]
AGOL_ARATH4.431e-1334.44Argonaute-like protein At2g27880 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC01009G12SK Veg1 Citrus clementina cDNA clone C01009G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287464 ID=CX287464; Name=CX287464; organism=Citrus clementina; type=EST; length=560bp
TTTTCAATTTTCACTGATATGGATTCCTTTGAACCTGATGGTAATGGTGC
CCGTGATGGAAATGGAGCTCCTGATAGTTTGCCGCCTCCGCCTCCTGTTA
TTCCACCTGACTTTGTTCCAACCCGAGTGGAAGAACAAGAACCAGCTAAG
AAAAAGGTGGTGAGGGTTCCAATATCCAGGCGTGGCCTTGGATCCAGAGG
GCAAAGGATATCATTGCTAACAAATCACTTCAAGGTTAATGTTACTAATG
TTGAGGGTCACTTCTATCACTACAGTGTTTCTGTGTCTTATGAAGATGGT
CGCCCTGTTGATGGTAAGGGTGCTGGAAGAAAAGTTATTGATAGGGTGCA
GGAGACATATAATGCTGAATTAGATGGAAAAGACTTTGCTTATGATGGGG
AGAAGAGTTTATTTACTGTTGGTCCCCTCCCACGTAACAAGCTTGAGTTC
ACTGTTGTGCTTGAGGATATTTCGTCTAACAGGAACAACGGAAATGCTAG
TCCTGATGCGCATGGAAGTCCAAACGGGAATGACAGAAAAAGATTACGGC
GTCCATATCG
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