CX287475
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287475 vs. ExPASy Swiss-Prot
Match: NOP2_MOUSE (Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus GN=Nop2 PE=2 SV=1) HSP 1 Score: 186.808 bits (473), Expect = 6.582e-47 Identity = 92/160 (57.50%), Postives = 120/160 (75.00%), Query Frame = 2 Query: 2 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDHALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS-------KKTSAGPQPSETVEQQTPESNVSNGDKKTEE 460 ISKD +VKT+K +DIQ+C++LQK+L+L+AID V+A SK+GGY+VY TCSI V ENE V+D+ALKKR+V+LVP GLDFG++GF RF+ RFHP+L TRRFYPH HNMDGFF+AK KK SNS +A P + +Q TP+S NG + T++ Sbjct: 454 ISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQARRFHPTLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQPHAGNSAAATPTEPDLKDQVTPKS--ENGSQPTKK 611
BLAST of CX287475 vs. ExPASy Swiss-Prot
Match: NOP2_HUMAN (Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens GN=NOP2 PE=1 SV=2) HSP 1 Score: 183.726 bits (465), Expect = 5.572e-46 Identity = 85/122 (69.67%), Postives = 104/122 (85.25%), Query Frame = 2 Query: 2 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDHALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 367 ISKD +VKT+K +DI +C++LQK+L+L+AID V+A SK+GGY+VY TCSI V ENE V+D+ALKKR+V+LVP GLDFG++GF RFRE RFHPSL TRRFYPH HNMDGFF+AK KK SNS Sbjct: 469 ISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNS 590
BLAST of CX287475 vs. ExPASy Swiss-Prot
Match: NOP2_SCHPO (Putative ribosomal RNA methyltransferase nop2 OS=Schizosaccharomyces pombe GN=SPBP8B7.20c PE=1 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 4.415e-43 Identity = 92/159 (57.86%), Postives = 118/159 (74.21%), Query Frame = 2 Query: 2 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDHALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQV 475 I KD+SVKT+KS D S+LQ+QL+L+AID V+A+SK+GG+IVYSTCSI V E+EAVI +ALKKR +VKLV GL+FGR+GF RFRE RFHPSL+ TRR+YPHVHN+DGFFVAKLKK+S+ TV + +N D + E+NS ++ Sbjct: 425 IYKDQSVKTNKSERDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVYSTCSITVDEDEAVIQYALKKRPNVKLVSTGLEFGREGFTRFREKRFHPSLKLTRRYYPHVHNIDGFFVAKLKKISDK---------IPTVNVADDMKDGTNNDVEIEKNSTEI 574
BLAST of CX287475 vs. ExPASy Swiss-Prot
Match: NOP2_YEAST (Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces cerevisiae GN=NOP2 PE=1 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 9.859e-35 Identity = 78/160 (48.75%), Postives = 109/160 (68.12%), Query Frame = 2 Query: 2 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDHALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSE 469 I KD+SVK S++ +D + +LQKQL+L+AID VD NSK GG IVYSTCS+ V E+EAVID+AL+KR +VKLV GL G++ F +R +FHPS++ RR+YPH +N+DGFFVAK +K+ S+ A + ET ++ E + + D T E+ E Sbjct: 430 IGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGIIHSDFATFEDEE 589 The following BLAST results are available for this feature:
BLAST of CX287475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287475 ID=CX287475; Name=CX287475; organism=Citrus clementina; type=EST; length=582bpback to top |