CX287475

Overview
NameCX287475
Unique NameCX287475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287475 vs. ExPASy Swiss-Prot
Match: NOP2_MOUSE (Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus GN=Nop2 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.582e-47
Identity = 92/160 (57.50%), Postives = 120/160 (75.00%), Query Frame = 2
Query:    2 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDHALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS-------KKTSAGPQPSETVEQQTPESNVSNGDKKTEE 460
            ISKD +VKT+K  +DIQ+C++LQK+L+L+AID V+A SK+GGY+VY TCSI V ENE V+D+ALKKR+V+LVP GLDFG++GF RF+  RFHP+L  TRRFYPH HNMDGFF+AK KK SNS          +A P   +  +Q TP+S   NG + T++
Sbjct:  454 ISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFQARRFHPTLRSTRRFYPHTHNMDGFFIAKFKKFSNSIPQPHAGNSAAATPTEPDLKDQVTPKS--ENGSQPTKK 611          
BLAST of CX287475 vs. ExPASy Swiss-Prot
Match: NOP2_HUMAN (Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens GN=NOP2 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 5.572e-46
Identity = 85/122 (69.67%), Postives = 104/122 (85.25%), Query Frame = 2
Query:    2 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDHALKKRDVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNS 367
            ISKD +VKT+K  +DI +C++LQK+L+L+AID V+A SK+GGY+VY TCSI V ENE V+D+ALKKR+V+LVP GLDFG++GF RFRE RFHPSL  TRRFYPH HNMDGFF+AK KK SNS
Sbjct:  469 ISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKKFSNS 590          
BLAST of CX287475 vs. ExPASy Swiss-Prot
Match: NOP2_SCHPO (Putative ribosomal RNA methyltransferase nop2 OS=Schizosaccharomyces pombe GN=SPBP8B7.20c PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.415e-43
Identity = 92/159 (57.86%), Postives = 118/159 (74.21%), Query Frame = 2
Query:    2 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDHALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKMSNSKKTSAGPQPSETVEQQTPESNVSNGDKKTEENSEQV 475
            I KD+SVKT+KS  D    S+LQ+QL+L+AID V+A+SK+GG+IVYSTCSI V E+EAVI +ALKKR +VKLV  GL+FGR+GF RFRE RFHPSL+ TRR+YPHVHN+DGFFVAKLKK+S+            TV       + +N D + E+NS ++
Sbjct:  425 IYKDQSVKTNKSERDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVYSTCSITVDEDEAVIQYALKKRPNVKLVSTGLEFGREGFTRFREKRFHPSLKLTRRYYPHVHNIDGFFVAKLKKISDK---------IPTVNVADDMKDGTNNDVEIEKNSTEI 574          
BLAST of CX287475 vs. ExPASy Swiss-Prot
Match: NOP2_YEAST (Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces cerevisiae GN=NOP2 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.859e-35
Identity = 78/160 (48.75%), Postives = 109/160 (68.12%), Query Frame = 2
Query:    2 ISKDESVKTSKSLEDIQKCSYLQKQLILAAIDMVDANSKSGGYIVYSTCSIMVTENEAVIDHALKKR-DVKLVPCGLDFGRQGFVRFREHRFHPSLEKTRRFYPHVHNMDGFFVAKLKKM--SNSKKTSAGPQPSET-VEQQTPESNVSNGDKKTEENSE 469
            I KD+SVK S++ +D  +  +LQKQL+L+AID VD NSK GG IVYSTCS+ V E+EAVID+AL+KR +VKLV  GL  G++ F  +R  +FHPS++  RR+YPH +N+DGFFVAK +K+  S+     A  +  ET   ++  E  + + D  T E+ E
Sbjct:  430 IGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTCSVAVEEDEAVIDYALRKRPNVKLVDTGLAIGKEAFTSYRGKKFHPSVKLARRYYPHTYNVDGFFVAKFQKIGPSSFDDNQASAKEKETAARKEALEEGIIHSDFATFEDEE 589          
The following BLAST results are available for this feature:
BLAST of CX287475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NOP2_MOUSE6.582e-4757.50Putative ribosomal RNA methyltransferase NOP2 OS=M... [more]
NOP2_HUMAN5.572e-4669.67Putative ribosomal RNA methyltransferase NOP2 OS=H... [more]
NOP2_SCHPO4.415e-4357.86Putative ribosomal RNA methyltransferase nop2 OS=S... [more]
NOP2_YEAST9.859e-3548.75Putative ribosomal RNA methyltransferase Nop2 OS=S... [more]
back to top
Properties
Property NameValue
Genbank descriptionC01010A01SK Veg1 Citrus clementina cDNA clone C01010A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287475 ID=CX287475; Name=CX287475; organism=Citrus clementina; type=EST; length=582bp
TATTTCTAAAGACGAGTCTGTTAAAACCTCTAAAAGCCTTGAAGATATAC
AGAAATGCTCCTATTTGCAGAAGCAACTGATTCTTGCCGCCATTGACATG
GTGGATGCTAATTCCAAGTCTGGGGGATATATTGTTTACTCCACATGCTC
CATAATGGTTACTGAGAATGAAGCAGTCATTGACCATGCACTCAAAAAGA
GGGATGTTAAACTTGTGCCGTGTGGGCTTGACTTTGGACGGCAGGGATTT
GTTCGCTTCAGGGAACATCGATTTCATCCATCCTTGGAAAAGACAAGGCG
TTTCTATCCTCACGTTCACAACATGGATGGATTCTTTGTAGCAAAGTTAA
AGAAAATGAGCAATTCAAAGAAAACATCAGCAGGTCCTCAACCTTCAGAA
ACTGTGGAGCAACAAACCCCTGAATCAAATGTGAGCAATGGTGACAAAAA
AACCGAGGAAAATTCTGAACAAGTTTTGATGAAAAAAGCCACTACAAAAG
CAAAGGATTTGAAGAAAAAGACAAGTGGTTTGGCTGAAAATGGGAATGTT
GAGTCCCCATCGAATGAAAAGAGAAGGAAGAA
back to top