CX287482

Overview
NameCX287482
Unique NameCX287482
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:43..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: BAS1_ORYSJ (2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 8.200e-54
Identity = 111/143 (77.62%), Postives = 117/143 (81.82%), Query Frame = 2
Query:  191 PRSFSGLRNPLQSQVPRPVSLSRGSRSRKSFVVKAS-VEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            P S S  R P    +    S SR +R+  SFV +A  V+  PLVGN APDF AEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRY EFEKLNTEILGVS DSVFSHLAWVQTDRKSGGLGDLKYPLI+D
Sbjct:   28 PHSLSLPRAPAARPLRLSASSSRSARA-SSFVARAGGVDDAPLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISD 169          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: BAS1_SPIOL (2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinacia oleracea GN=BAS1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.071e-53
Identity = 107/132 (81.06%), Postives = 114/132 (86.36%), Query Frame = 2
Query:  221 LQSQVPRPVSLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            L+S   R  SLS  S SR+SF VKA  +  PLVGN APDF AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR++EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPLI+D
Sbjct:   45 LRSGFARRSSLS--STSRRSFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISD 174          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: BAS1A_ARATH (2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabidopsis thaliana GN=BAS1 PE=1 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.071e-53
Identity = 107/132 (81.06%), Postives = 114/132 (86.36%), Query Frame = 2
Query:  221 LQSQVPRPVSLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            L+S   R  SLS  S SR+SF VKA  +  PLVGN APDF AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR++EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPLI+D
Sbjct:   45 LRSGFARRSSLS--STSRRSFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISD 174          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: BAS1B_ARATH (2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.547e-52
Identity = 99/118 (83.90%), Postives = 106/118 (89.83%), Query Frame = 2
Query:  263 SRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            S SR++F VKA  +  PLVGN APDF AEAVFDQEFI VKLS+YIGKKYVILFFYPLDFTFVCPTEITAFSDRY EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPL++D
Sbjct:   62 SASRRNFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSD 179          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: BAS1_WHEAT (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Triticum aestivum GN=TSA PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 7.675e-52
Identity = 99/115 (86.09%), Postives = 107/115 (93.04%), Query Frame = 2
Query:  275 KSFVVKASVEIP-PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +SFV +A+ E   PLVGN APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR+ EFEK+NTEILGVS DSVFSHLAWVQT+RKSGGLGDLKYPL++D
Sbjct:    5 RSFVARAAAEYDLPLVGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSD 119          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: BAS1_HORVU (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare GN=BAS1 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 7.675e-52
Identity = 99/115 (86.09%), Postives = 107/115 (93.04%), Query Frame = 2
Query:  275 KSFVVKASVEIP-PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            +SFV +A+ E   PLVGN APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR+ EFEK+NTEILGVS DSVFSHLAWVQT+RKSGGLGDLKYPL++D
Sbjct:    5 RSFVARAAAEYDLPLVGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSD 119          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: YCF42_PORPU (Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 7.451e-39
Identity = 75/100 (75.00%), Postives = 89/100 (89.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            VG  APDF+A AV+DQEF  +KLSD+   KYVILFFYPLDFTFVCPTEITAFSD+Y++F +LNTEILGVS DS +SHLAW+QTDR+SGGLGDL+YPL++D
Sbjct:   10 VGQIAPDFSATAVYDQEFKTIKLSDF-KNKYVILFFYPLDFTFVCPTEITAFSDKYSDFSELNTEILGVSVDSEYSHLAWLQTDRESGGLGDLEYPLVSD 108          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: YCF42_PORYE (Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.405e-37
Identity = 72/100 (72.00%), Postives = 86/100 (86.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            VG  APDF+A AV+DQEF  +KLSD +  KY++LFFYPLDFTFVCPTEITAFSD+Y  F +LNTE+LGVS DS +SHLAW+QTDR+SGGLGDL YPL++D
Sbjct:   10 VGQLAPDFSATAVYDQEFKTLKLSD-LKNKYIVLFFYPLDFTFVCPTEITAFSDKYNAFSELNTEVLGVSVDSEYSHLAWLQTDRESGGLGDLSYPLVSD 108          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: Y755_SYNY3 (Putative peroxiredoxin sll0755 OS=Synechocystis sp. (strain PCC 6803) GN=sll0755 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.240e-34
Identity = 66/100 (66.00%), Postives = 82/100 (82.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            VG  APDF A A+ DQ F  VKLS Y GK Y++LFFYPLDFTFVCPTEI AFSDR++EF  L+TE++G+S DS FSHLAW+QT+RK GG+G++ YPL++D
Sbjct:    7 VGQPAPDFTATAIVDQSFQTVKLSTYRGK-YLVLFFYPLDFTFVCPTEIIAFSDRHSEFTALDTEVVGISVDSEFSHLAWIQTERKMGGIGNINYPLVSD 105          
BLAST of CX287482 vs. ExPASy Swiss-Prot
Match: PRDX2_BOVIN (Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.678e-33
Identity = 70/100 (70.00%), Postives = 76/100 (76.00%), Query Frame = 2
Query:  317 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIAD 616
            VG  AP+F A AV D  F  VKLSDY GK YV+LFFYPLDFTFVCPTEI AFSDR  EF KLN E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD
Sbjct:    9 VGKPAPEFQATAVVDGAFKEVKLSDYKGK-YVVLFFYPLDFTFVCPTEIVAFSDRAAEFHKLNCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLAD 107          
The following BLAST results are available for this feature:
BLAST of CX287482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 105
Match NameE-valueIdentityDescription
BAS1_ORYSJ8.200e-5477.622-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza s... [more]
BAS1_SPIOL1.071e-5381.062-Cys peroxiredoxin BAS1, chloroplastic OS=Spinaci... [more]
BAS1A_ARATH1.071e-5381.062-Cys peroxiredoxin BAS1, chloroplastic OS=Arabido... [more]
BAS1B_ARATH1.547e-5283.902-Cys peroxiredoxin BAS1-like, chloroplastic OS=Ar... [more]
BAS1_WHEAT7.675e-5286.092-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_HORVU7.675e-5286.092-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
YCF42_PORPU7.451e-3975.00Putative peroxiredoxin ycf42 OS=Porphyra purpurea ... [more]
YCF42_PORYE1.405e-3772.00Putative peroxiredoxin ycf42 OS=Porphyra yezoensis... [more]
Y755_SYNY33.240e-3466.00Putative peroxiredoxin sll0755 OS=Synechocystis sp... [more]
PRDX2_BOVIN4.678e-3370.00Peroxiredoxin-2 OS=Bos taurus GN=PRDX2 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01010A08SK Veg1 Citrus clementina cDNA clone C01010A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287482 ID=CX287482; Name=CX287482; organism=Citrus clementina; type=EST; length=617bp
ATTTTGAGCAACAGATAGCCACACTTTGTTTTTCCCCGTTCGTTGACTCC
AGCTGAACAATAATACAACAACAAAAACAATGGCTTGCTCAGCTGCTTCT
GCTGCTGCCACGGCAACAGCCGCTCTCATTTCCTCTAACCCCAAGGCTTT
CTCTTCTTCCTCAATCTCCCCTTCTCAAAACCTAACCATTCCCCGCTCCT
TCTCCGGCCTCCGCAATCCCCTCCAGTCCCAGGTCCCCCGCCCCGTTTCT
CTTTCCCGCGGGTCCCGTTCTCGCAAGTCCTTCGTTGTCAAAGCATCCGT
TGAAATACCACCATTGGTGGGCAACACGGCACCTGATTTTGCTGCAGAGG
CTGTTTTCGATCAAGAGTTCATCAATGTCAAGCTTTCGGATTACATTGGG
AAGAAATATGTGATTCTCTTTTTCTACCCGTTGGACTTCACATTTGTTTG
CCCCACAGAAATCACTGCTTTCAGCGACCGATATACTGAATTTGAGAAGC
TAAACACAGAGATATTGGGTGTCTCAACCGACAGTGTGTTTTCACACTTG
GCATGGGTCCAAACAGACAGAAAGTCAGGTGGTCTTGGTGATTTGAAGTA
CCCACTAATTGCTGATA
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