CX287484

Overview
NameCX287484
Unique NameCX287484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length591
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287484 vs. ExPASy Swiss-Prot
Match: CAHC_ARATH (Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.350e-39
Identity = 84/112 (75.00%), Postives = 89/112 (79.46%), Query Frame = 3
Query:    3 AIEAXXXXXXXXXXXXPVAAAKVEQITAQLQT--PSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPP 332
            AIEA             VAAAKVEQITA LQT   SD KAFD VE IK+GFI FK+EKYE NPALY ELAKGQSPKYMVFACSDSRVCPSHVLDFQPG+AFVVRN+AN+VPP
Sbjct:   86 AIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPP 197          

HSP 2 Score: 145.206 bits (365), Expect = 2.277e-34
Identity = 75/122 (61.48%), Postives = 90/122 (73.77%), Query Frame = 2
Query:  227 YGICLLRLQGLPVPCVGFSTWGSFRGSQCC*---HCSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLS 583
            Y +  L+++ + V  +G S  G  +G        + STDFIEDWVKI +PAKSKV++E GD  F DQC  CE+EAVNVSL+NLLTYPFVREGLV  TLALKGGYYDFV G+FELWGL+F LS
Sbjct:  212 YAVLHLKVENIVV--IGHSACGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYDFVKGAFELWGLEFGLS 331          
BLAST of CX287484 vs. ExPASy Swiss-Prot
Match: CAH2_ARATH (Carbonic anhydrase 2 OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.990e-38
Identity = 80/112 (71.43%), Postives = 91/112 (81.25%), Query Frame = 3
Query:    3 AIEAXXXXXXXXXXXXPVAAAKVEQITAQLQ--TPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPP 332
            AIEA             VAAAKV++ITA+LQ  + SD+K+FD VERIKEGF+ FK+EKYE NPALY ELAKGQSPKYMVFACSDSRVCPSHVLDF PG+AFVVRN+AN+VPP
Sbjct:    9 AIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPP 120          

HSP 2 Score: 141.354 bits (355), Expect = 3.287e-33
Identity = 74/123 (60.16%), Postives = 87/123 (70.73%), Query Frame = 2
Query:  227 YGICLLRLQGLPVPCVGFSTWGSFRGSQCC*---HCSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSP 586
            Y +  L+++ + V  +G S  G  +G        + STDFIEDWVKI +PAKSKVL E     F DQC  CE+EAVNVSL+NLLTYPFVREG+V  TLALKGGYYDFVNGSFELW L F +SP
Sbjct:  135 YAVLHLKVENIVV--IGHSACGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCEREAVNVSLANLLTYPFVREGVVKGTLALKGGYYDFVNGSFELWELQFGISP 255          
BLAST of CX287484 vs. ExPASy Swiss-Prot
Match: CAHC_TOBAC (Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.290e-37
Identity = 72/93 (77.42%), Postives = 84/93 (90.32%), Query Frame = 3
Query:   51 PVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVP 329
            P+AAA+V+QITA+LQ+   +K FD VE +K GFIHFK EKYEKNPALY EL+KGQSPK+MVFACSDSRVCPSHVL+FQPGEAFVVRN+AN+VP
Sbjct:   89 PIAAARVDQITAELQSSDGSKPFDPVEHMKAGFIHFKTEKYEKNPALYGELSKGQSPKFMVFACSDSRVCPSHVLNFQPGEAFVVRNIANMVP 181          

HSP 2 Score: 152.525 bits (384), Expect = 1.426e-36
Identity = 79/123 (64.23%), Postives = 90/123 (73.17%), Query Frame = 2
Query:  227 YGICLLRLQGLPVPCVGFSTWGSFRGSQCC*HC---STDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSP 586
            Y +  L+++ + V  +G S  G  +G          ST FIEDWVKIG+PAK+KV  EH DK F DQCT CEKEAVNVSL NLLTYPFVREGLV KTLALKGG+YDFVNG FELWGL+F LSP
Sbjct:  197 YAVLHLKVENIVV--IGHSACGGIKGLMSLPADGSESTAFIEDWVKIGLPAKAKVQGEHVDKCFADQCTACEKEAVNVSLGNLLTYPFVREGLVKKTLALKGGHYDFVNGGFELWGLEFGLSP 317          
BLAST of CX287484 vs. ExPASy Swiss-Prot
Match: CAHC_SPIOL (Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 4.901e-37
Identity = 76/123 (61.79%), Postives = 92/123 (74.80%), Query Frame = 2
Query:  227 YGICLLRLQGLPVPCVGFSTWGSFRGSQCC*HC---STDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSP 586
            Y +  L+++ + V  +G S  G  +G          +TDFIEDWVKI +PAK KVL EHG+  F +QCT+CEKEAVNVSL NLLTYPFVR+GLV KTLAL+GGYYDFVNGSFELWGL++ LSP
Sbjct:  195 YAVLHLKVENIVV--IGHSACGGIKGLMSFPDAGPTTTDFIEDWVKICLPAKHKVLAEHGNATFAEQCTHCEKEAVNVSLGNLLTYPFVRDGLVKKTLALQGGYYDFVNGSFELWGLEYGLSP 315          

HSP 2 Score: 140.584 bits (353), Expect = 5.608e-33
Identity = 67/91 (73.63%), Postives = 78/91 (85.71%), Query Frame = 3
Query:   57 AAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVP 329
            AA+KV QIT++L       A   V+RIKEGFI FK+EKYEKNPALY EL+KGQ+PK+MVFACSDSRVCPSHVLDFQPGEAF+VRN+AN+VP
Sbjct:   89 AASKVAQITSELADGGTPSASYPVQRIKEGFIKFKKEKYEKNPALYGELSKGQAPKFMVFACSDSRVCPSHVLDFQPGEAFMVRNIANMVP 179          
BLAST of CX287484 vs. ExPASy Swiss-Prot
Match: CAHC_PEA (Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.901e-37
Identity = 70/86 (81.40%), Postives = 77/86 (89.53%), Query Frame = 2
Query:  326 STDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLS 583
            STDFIE+WVKIG+PAK+KV  +HGD PF + CT+CEKEAVN SL NLLTYPFVREGLVNKTLALKGGYYDFV GSFELWGL+F LS
Sbjct:  238 STDFIEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLALKGGYYDFVKGSFELWGLEFGLS 323          

HSP 2 Score: 148.288 bits (373), Expect = 2.689e-35
Identity = 73/95 (76.84%), Postives = 81/95 (85.26%), Query Frame = 3
Query:   57 AAAKVEQITAQLQTPSDTKAF---DSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPP 332
            AA KVEQITAQL T S +      ++ ERIK GF+HFK+EKY+KNPALY ELAKGQSP +MVFACSDSRVCPSHVLDFQPGEAFVVRNVAN+VPP
Sbjct:   95 AAEKVEQITAQLGTTSSSDGIPKSEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPP 189          
BLAST of CX287484 vs. ExPASy Swiss-Prot
Match: CAHX_FLABR (Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.426e-36
Identity = 75/110 (68.18%), Postives = 83/110 (75.45%), Query Frame = 3
Query:    3 AIEAXXXXXXXXXXXXPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPP 332
            AI+A            PVAAA+++QITAQ   P     FD VERIK GF+ FK EK+  NPALY ELAKGQSPK+MVFACSDSRVCPSHVLDFQPGEAFVVRNVAN+VPP
Sbjct:   82 AIDALKKMLIEKGELEPVAAARIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPP 191          

HSP 2 Score: 142.124 bits (357), Expect = 1.927e-33
Identity = 74/124 (59.68%), Postives = 86/124 (69.35%), Query Frame = 2
Query:  227 YGICLLRLQGLPVPCVGFSTWGSFRGSQCC*H---CSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSPP 589
            Y +  L++Q + V  +G S  G  +G          STDFIEDWVK+ +PAKSKV+ EH      DQC  CEKEAVNVSL NLLTYPFVR+GL N TLALKGG+YDFVNG+FELW LDF LS P
Sbjct:  206 YAVLHLKVQEIFV--IGHSRCGGIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELWALDFGLSSP 327          
BLAST of CX287484 vs. ExPASy Swiss-Prot
Match: CAH1_FLALI (Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.426e-36
Identity = 75/110 (68.18%), Postives = 83/110 (75.45%), Query Frame = 3
Query:    3 AIEAXXXXXXXXXXXXPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPP 332
            AI+A            PVAAA+++QITAQ   P     FD VERIK GF+ FK EK+  NPALY ELAKGQSPK+MVFACSDSRVCPSHVLDFQPGEAFVVRNVAN+VPP
Sbjct:   82 AIDALKKMLIEKGELEPVAAARIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPP 191          

HSP 2 Score: 142.124 bits (357), Expect = 1.927e-33
Identity = 74/124 (59.68%), Postives = 86/124 (69.35%), Query Frame = 2
Query:  227 YGICLLRLQGLPVPCVGFSTWGSFRGSQCC*H---CSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSPP 589
            Y +  L++Q + V  +G S  G  +G          STDFIEDWVK+ +PAKSKV+ EH      DQC  CEKEAVNVSL NLLTYPFVR+GL N TLALKGG+YDFVNG+FELW LDF LS P
Sbjct:  206 YAVLHLKVQEIFV--IGHSRCGGIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVQCEKEAVNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELWALDFGLSSP 327          
BLAST of CX287484 vs. ExPASy Swiss-Prot
Match: CAHX_FLAPR (Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.149e-36
Identity = 74/110 (67.27%), Postives = 82/110 (74.55%), Query Frame = 3
Query:    3 AIEAXXXXXXXXXXXXPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPP 332
            AI+A            PVAAA+++QITAQ   P     FD VERIK GF+ FK EK+  NP LY ELAKGQSPK+MVFACSDSRVCPSHVLDFQPGEAFVVRNVAN+VPP
Sbjct:   81 AIDALKKMLIEKGELEPVAAARIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPVLYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPP 190          

HSP 2 Score: 142.124 bits (357), Expect = 1.927e-33
Identity = 74/124 (59.68%), Postives = 86/124 (69.35%), Query Frame = 2
Query:  227 YGICLLRLQGLPVPCVGFSTWGSFRGSQCC*H---CSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSPP 589
            Y +  L++Q + V  +G S  G  +G          STDFIEDWVK+ +PAKSKV+ EH      DQC  CEKEAVNVSL NLLTYPFVR+GL N TLALKGG+YDFVNG+FELW LDF LS P
Sbjct:  205 YAVLHLKVQEIFV--IGHSRCGGIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLRNNTLALKGGHYDFVNGTFELWALDFGLSSP 326          
BLAST of CX287484 vs. ExPASy Swiss-Prot
Match: CAHX_FLABI (Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 4.149e-36
Identity = 74/110 (67.27%), Postives = 82/110 (74.55%), Query Frame = 3
Query:    3 AIEAXXXXXXXXXXXXPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPP 332
            AI+A            PVAA +++QITAQ   P     FD VERIK GF+ FK EK+  NPALY ELAKGQSPK+MVFACSDSRVCPSHVLDFQPGEAFVVRNVAN+VPP
Sbjct:   82 AIDALKKTLIEKGELEPVAATRIDQITAQAAAPDTKAPFDPVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANMVPP 191          

HSP 2 Score: 144.05 bits (362), Expect = 5.072e-34
Identity = 75/124 (60.48%), Postives = 87/124 (70.16%), Query Frame = 2
Query:  227 YGICLLRLQGLPVPCVGFSTWGSFRGSQCC*H---CSTDFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSPP 589
            Y +  L++Q + V  +G S  G  +G          STDFIEDWVK+ +PAKSKV+ EH      DQC  CEKEAVNVSL NLLTYPFVR+GL NKTLALKGG+YDFVNG+FELW LDF LS P
Sbjct:  206 YAVLHLKVQEIFV--IGHSRCGGIKGLMTFPDEGPHSTDFIEDWVKVCLPAKSKVVAEHNGTHLDDQCVLCEKEAVNVSLGNLLTYPFVRDGLRNKTLALKGGHYDFVNGTFELWALDFGLSSP 327          
BLAST of CX287484 vs. ExPASy Swiss-Prot
Match: CAH2_FLALI (Carbonic anhydrase 2 (Fragment) OS=Flaveria linearis PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.994e-30
Identity = 67/123 (54.47%), Postives = 83/123 (67.48%), Query Frame = 2
Query:  227 YGICLLRLQGLPVPCVGFSTWGSFRGSQCC*HCST---DFIEDWVKIGIPAKSKVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSP 586
            Y +  L+++ + V  +G S  G  +G        T   DFIE WVK+G+PAKSKV     +  F D CT CEKEAVNVSL NLLTYPFVR+ LVNK L+LKG +YDFVNG+F+LW LDF +SP
Sbjct:   66 YAVLHLKVENIVV--IGHSCCGGIKGLMSIPDDGTPASDFIEQWVKLGLPAKSKVKANCNNLEFADLCTKCEKEAVNVSLGNLLTYPFVRDALVNKKLSLKGAHYDFVNGAFDLWNLDFGISP 186          

HSP 2 Score: 101.293 bits (251), Expect = 3.770e-21
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 3
Query:  180 NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPP 332
            NP LY ELAKGQSPK++VFACSDSRVCPSH+LDFQPGEAFVVRN+AN+VPP
Sbjct:    1 NPTLYGELAKGQSPKFLVFACSDSRVCPSHILDFQPGEAFVVRNIANMVPP 51          
The following BLAST results are available for this feature:
BLAST of CX287484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CAHC_ARATH2.350e-3975.00Carbonic anhydrase, chloroplastic OS=Arabidopsis t... [more]
CAH2_ARATH1.990e-3871.43Carbonic anhydrase 2 OS=Arabidopsis thaliana GN=CA... [more]
CAHC_TOBAC1.290e-3777.42Carbonic anhydrase, chloroplastic OS=Nicotiana tab... [more]
CAHC_SPIOL4.901e-3761.79Carbonic anhydrase, chloroplastic OS=Spinacia oler... [more]
CAHC_PEA4.901e-3781.40Carbonic anhydrase, chloroplastic OS=Pisum sativum... [more]
CAHX_FLABR1.426e-3668.18Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1[more]
CAH1_FLALI1.426e-3668.18Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=... [more]
CAHX_FLAPR4.149e-3667.27Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1[more]
CAHX_FLABI4.149e-3667.27Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2[more]
CAH2_FLALI1.994e-3054.47Carbonic anhydrase 2 (Fragment) OS=Flaveria linear... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01010A10SK Veg1 Citrus clementina cDNA clone C01010A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287484 ID=CX287484; Name=CX287484; organism=Citrus clementina; type=EST; length=591bp
AAGCCATTGAAGCTCTCAAGAAACTTCTCAAGGAGAAGGAAGACTTGAAA
CCTGTTGCTGCTGCAAAAGTAGAGCAGATTACTGCGCAGCTACAGACTCC
ATCTGACACCAAAGCATTTGATTCCGTGGAGAGGATCAAAGAGGGCTTCA
TTCACTTCAAGAGAGAAAAATACGAGAAAAATCCAGCTCTGTACTCTGAG
CTCGCCAAAGGCCAAAGCCCGAAGTATATGGTATTTGCCTGCTCAGACTC
CAGGGTTTGCCCGTCCCATGTGTTGGATTTTCAACCTGGGGAAGCTTTCG
TGGTTCGCAATGTTGCTAACATTGTTCCACCGATTTCATTGAAGACTGGG
TGAAAATTGGCATCCCTGCCAAGTCTAAGGTGTTAACAGAGCATGGTGAC
AAGCCTTTTGGAGACCAATGCACATACTGTGAAAAGGAGGCGGTGAATGT
GTCCCTCAGTAATCTGCTAACGTATCCATTTGTGAGAGAAGGCTTGGTGA
ACAAAACTCTGGCACTCAAGGGTGGTTACTATGATTTCGTTAATGGATCA
TTCGAGCTCTGGGGTCTCGACTTTAGCCTTTCTCCTCCACT
back to top