CX287487

Overview
NameCX287487
Unique NameCX287487
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length557
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14419 contig Ccv1_Contig14419:587..1143. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 9.327e-48
Identity = 90/174 (51.72%), Postives = 131/174 (75.29%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGN--GVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDHFKRFFSR 517
            E+Y SE++++A  ++ +MA+AL + P ++++LF +   VQ +RMNYYPPCPQP+QVIG+  H D+  LT+L+ +N ++GLQIKKDGK V V+PLP+AFIVNIGD+LE+ TNG YRS+EHR  VNS K++LS ATF+   +  E+GPA SL+ R+    FKR+++ ++    FSR
Sbjct:  172 EMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYNDGLFSR 345          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.072e-27
Identity = 63/167 (37.72%), Postives = 100/167 (59.88%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGNG--VQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDH 496
            E Y   L+ +   +   ++  L ++PN  K+  G    V  +++NYYPPCP+P+  +G+ +H D SA+T+L+P N++ GLQ+ KDG     + +P+A IV+IGD +E+ +NG Y+S+ HR TVN  K ++S+  F     D E+GP P L+  E P  FK     D+
Sbjct:  160 EEYAKRLQLVVDNLFKYLSLGLDLEPNSFKDGAGGDDLVYLMKINYYPPCPRPDLALGV-AHTDMSAITVLVP-NEVPGLQVYKDGHWYDCKYIPNALIVHIGDQVEIMSNGKYKSVYHRTTVNKEKTRMSWPVFLEPPPDHEVGPIPKLVNEENPAKFKTKKYKDY 324          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.074e-27
Identity = 62/167 (37.13%), Postives = 101/167 (60.48%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGNG--VQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDH 496
            E Y   ++ +  +I   ++  L ++ ++M E  G    V  L++NYYPPCP+P+  +G+ +H D S +TIL+P N++ GLQ+ KDG    V+ +P+A IV+IGD +E+ +NG Y+S+ HR TVN  K ++S+  F     + E+GP P L++   P  FK     D+
Sbjct:  173 EEYGKRMREVVDRIFKSLSLGLGLEGHEMIEAAGGDEIVYLLKINYYPPCPRPDLALGVVAHTDMSYITILVP-NEVQGLQVFKDGHWYDVKYIPNALIVHIGDQVEILSNGKYKSVYHRTTVNKDKTRMSWPVFLEPPSEHEVGPIPKLLSEANPPKFKTKKYKDY 338          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: FLS_PETCR (Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.548e-26
Identity = 60/167 (35.93%), Postives = 101/167 (60.48%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGNG--VQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDH 496
            E Y   L+ +  K+ + ++  + ++ +++K+  G    +  L++NYYPPCP+P+  +G+ +H D SA+TIL+P N++ GLQ+ KD     V+ +P+A I++IGD +E+ +NG Y+S+ HR TVN  K ++S+  F     +   GP   LIT E P  FK     D+
Sbjct:  162 EEYAVALRGVVDKLFEALSLGIGLEKHELKKASGGDDLIYMLKINYYPPCPRPDLALGVVAHTDMSAITILVP-NEVQGLQVHKDDHWYDVKYIPNALIIHIGDQIEIMSNGKYKSVYHRTTVNKDKTRMSWPVFLEPPPELLTGPISKLITDENPAKFKTKKYKDY 327          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.683e-26
Identity = 58/148 (39.19%), Postives = 88/148 (59.46%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLIT 451
            Y  E+K L+L I++ +  +L ++    +E F +    +R NYYPPCP+PE+ +G   HCD +ALTILL  + + GL++  DG+   V P+P A ++NIGD     +NG Y+S  HRA VN  +++ S A F   + D  + P PS  T
Sbjct:  192 YCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQ-DDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAAT 338          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.683e-26
Identity = 58/148 (39.19%), Postives = 88/148 (59.46%), Query Frame = 2
Query:    8 YLSELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLIT 451
            Y  E+K L+L I++ +  +L ++    +E F +    +R NYYPPCP+PE+ +G   HCD +ALTILL  + + GL++  DG+   V P+P A ++NIGD     +NG Y+S  HRA VN  +++ S A F   + D  + P PS  T
Sbjct:  192 YCEEMKELSLTIMELLELSLGVERGYYREFFADSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQ-DDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAAT 338          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: FLS_CITUN (Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.003e-25
Identity = 57/167 (34.13%), Postives = 99/167 (59.28%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGNG--VQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDH 496
            E Y   ++ +  K+   ++  L ++   +KE  G       L++NYYPPCP+P+  +G+ +H D SALT+L+P N++ GLQ+ KD + +  + +P+A +++IGD +E+ +NG Y+++ HR TVN  K ++S+  F     D  +GP P L+  E P  +K     D+
Sbjct:  160 EEYAKYMREVVDKLFTYLSLGLGVEGGVLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVP-NEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVNKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 325          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: ACCO1_DORSP (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Doritaenopsis sp. GN=ACO1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.235e-25
Identity = 57/152 (37.50%), Postives = 95/152 (62.50%), Query Frame = 2
Query:   17 ELKNLALKILDQMAKALRMDPNDMKELFGNGVQ*L-----RMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRE 457
            EL+NLA ++LD + + L ++   +K++F  G   L     +++ YPPCP+PE + G+ +H DA  + +L   +++ GLQ+ KDG+ + V P+  + +VNIGD LEV TNG Y+S+ HR    +   ++S A+FY    D  + PAP+L+ +E
Sbjct:  122 ELENLAERLLDLLCEDLGLEKGYLKKVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWIDVPPVRHSIVVNIGDQLEVITNGKYKSVLHRVVAQTDGNRMSIASFYNPGSDAVIFPAPALVEKE 273          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.813e-25
Identity = 61/172 (35.47%), Postives = 104/172 (60.47%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPN----DMKELFGNGVQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDHFKR 505
            E Y  EL+ +A+ +   MAK L ++       ++ +F    + L     P      + +G++ H DA+ LT+L+ +N+++GL IKKD K V ++P+  AF+VNIGD++E+ +NGIY+S+EHRA +N+ K++LS A F+  +   ++GP P L+ +E    +K I   D+  R
Sbjct:  170 EKYSMELQKVAMCLTGMMAKNLGLESEILTKPLRTVFNREDELL-----PSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLV-KENGVKYKTIDYEDYLIR 335          
BLAST of CX287487 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.980e-25
Identity = 61/167 (36.53%), Postives = 98/167 (58.68%), Query Frame = 2
Query:    2 EVYLSELKNLALKILDQMAKALRMDPNDMKELFGNG--VQ*LRMNYYPPCPQPEQVIGINSHCDASALTILLPINQMDGLQIKKDGKLVAVRPLPDAFIVNIGDILEVFTNGIYRSMEHRATVNSMKKKLSFATFYGAKLDGELGPAPSLITRETPTLFKRISVVDH 496
            E Y   L+ +A  I   ++  L ++ ++M E  G+   V  L++NYYPPCP+P+  +G+ +H D S +T+L+P    + +Q+ KDG    V  +P+A IV+IGD +E+ +NG Y+S+ HR TVN  K ++S+  F     + E+GP P+LI    P  FK     D+
Sbjct:  177 EEYAKWLRKVADGIFRSLSLGLGLEGHEMMEAAGSEDIVYMLKINYYPPCPRPDLALGVVAHTDMSYITLLVP----NEVQVFKDGHWYDVNYIPNAIIVHIGDQVEILSNGKYKSVYHRTTVNKYKTRMSWPVFLEPSSEHEVGPIPNLINEANPPKFKTKKYKDY 339          
The following BLAST results are available for this feature:
BLAST of CX287487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
SRG1_ARATH9.327e-4851.72Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
FLS_EUSGR1.072e-2737.72Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
FLS_PETHY4.074e-2737.13Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
FLS_PETCR1.548e-2635.93Flavonol synthase/flavanone 3-hydroxylase OS=Petro... [more]
GAOX2_ORYSJ7.683e-2639.19Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI7.683e-2639.19Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
FLS_CITUN1.003e-2534.13Flavonol synthase/flavanone 3-hydroxylase OS=Citru... [more]
ACCO1_DORSP2.235e-2537.501-aminocyclopropane-1-carboxylate oxidase 1 OS=Dor... [more]
NCS1_COPJA3.813e-2535.47S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
FLS_SOLTU4.980e-2536.53Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]

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Properties
Property NameValue
Genbank descriptionC01010B01SK Veg1 Citrus clementina cDNA clone C01010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287487 ID=CX287487; Name=CX287487; organism=Citrus clementina; type=EST; length=557bp
GGAAGTTTACTTATCAGAACTGAAAAATCTTGCCCTGAAAATCCTTGATC
AAATGGCTAAAGCTCTAAGAATGGATCCTAATGATATGAAAGAGTTGTTT
GGAAACGGGGTACAATAATTAAGGATGAATTATTATCCTCCTTGTCCGCA
ACCAGAGCAAGTTATCGGCATTAATTCCCATTGTGATGCCTCCGCACTTA
CCATCCTCCTCCCAATCAATCAGATGGATGGTCTCCAAATAAAGAAAGAT
GGAAAATTGGTTGCTGTTAGACCCCTTCCAGATGCCTTTATAGTCAACAT
TGGAGACATTTTAGAGGTTTTTACCAATGGAATTTACCGTAGTATGGAAC
ATCGTGCAACTGTGAACTCAATGAAGAAAAAATTATCTTTTGCTACATTT
TATGGTGCAAAATTAGATGGAGAATTGGGTCCAGCACCAAGTCTTATTAC
TCGAGAGACACCAACATTATTTAAGAGGATAAGTGTGGTAGATCACTTTA
AAAGATTTTTTTCAAGAGCTACGTGGAAAATCATTTTTTGATTTCTTGAG
AATTCAA
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