CX287494

Overview
NameCX287494
Unique NameCX287494
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length538
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287494_ssr367 microsatellite CX287494_ssr367:367..378. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11230 contig Ccv1_Contig11230:71..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287494 vs. ExPASy Swiss-Prot
Match: SAPK8_ORYSJ (Serine/threonine-protein kinase SAPK8 OS=Oryza sativa subsp. japonica GN=SAPK8 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.213e-17
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 3
Query:  396 AMDRSAMTVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDKKT 533
            A DR+A+TVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRD++T
Sbjct:   10 APDRAALTVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDRRT 55          
BLAST of CX287494 vs. ExPASy Swiss-Prot
Match: SAPKA_ORYSJ (Serine/threonine-protein kinase SAPK10 OS=Oryza sativa subsp. japonica GN=SAPK10 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.098e-16
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 3
Query:  399 MDRSAMTVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDK 527
            MDR+A+TVGPGMDMPIMHD DRYELVRDIGSGNFGVARLMR +
Sbjct:    1 MDRAALTVGPGMDMPIMHDGDRYELVRDIGSGNFGVARLMRSR 43          
BLAST of CX287494 vs. ExPASy Swiss-Prot
Match: SRK2I_ARATH (Serine/threonine-protein kinase SRK2I OS=Arabidopsis thaliana GN=SRK2I PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.093e-13
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 3
Query:  399 MDRSAMTVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDKKTE 536
            MDR+ +T GP +DMPIMHDSDRY+ V+DIGSGNFGVARLMRDK T+
Sbjct:    1 MDRAPVTTGP-LDMPIMHDSDRYDFVKDIGSGNFGVARLMRDKLTK 45          
BLAST of CX287494 vs. ExPASy Swiss-Prot
Match: SRK2E_ARATH (Serine/threonine-protein kinase SRK2E OS=Arabidopsis thaliana GN=SRK2E PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.618e-12
Identity = 36/45 (80.00%), Postives = 42/45 (93.33%), Query Frame = 3
Query:  399 MDRSAMTVGPGMDMPIMHDSDRYELVRDIGSGNFGVARLMRDKKT 533
            MDR A++ GP MD+PIMHDSDRYELV+DIGSGNFGVARLMRDK++
Sbjct:    1 MDRPAVS-GP-MDLPIMHDSDRYELVKDIGSGNFGVARLMRDKQS 43          
The following BLAST results are available for this feature:
BLAST of CX287494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SAPK8_ORYSJ1.213e-1789.13Serine/threonine-protein kinase SAPK8 OS=Oryza sat... [more]
SAPKA_ORYSJ5.098e-1688.37Serine/threonine-protein kinase SAPK10 OS=Oryza sa... [more]
SRK2I_ARATH3.093e-1376.09Serine/threonine-protein kinase SRK2I OS=Arabidops... [more]
SRK2E_ARATH2.618e-1280.00Serine/threonine-protein kinase SRK2E OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionC01010B08SK Veg1 Citrus clementina cDNA clone C01010B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287494 ID=CX287494; Name=CX287494; organism=Citrus clementina; type=EST; length=538bp
AAAAACAAACCGTGTCTCGGTGTCCGTACAGTTCTAGAGGGTGACAGAGT
GAGACTTGAACGTCTCAGTTTCGTAATCACGACTTCACGAGCTTCTTTCT
TCGTTCTAACAGTCCCTCAACCAGAAAAAAAAAAATATTCAAAGAGAAAA
CTCAGTTGGACAGGTGAACTTTTCACGGGCTAAGTCCCATCATCAGTCTC
CTTTATCAACCCACCACAATCCAACCGTCCATACTTCGCCACGTTATCAC
CGCCACCGTCGCCCTGATCGCGATCGTGCTCTTCTTTGTTCCCATCATAT
GATAATGTGACTGTTTGGAGTATTTTAATTTCTTTTATCTTTTTTTGGTT
GCTTGTTTTGATTTACATATATATATATACGCACGCATATAGAGTGCAAT
GGATCGATCCGCGATGACGGTGGGTCCCGGCATGGACATGCCGATCATGC
ACGATAGCGATCGGTATGAGCTCGTTCGGGATATTGGGTCGGGGAATTTT
GGGGTGGCCAGGTTGATGAGAGATAAAAAAACTGAGGA
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