CX287495

Overview
NameCX287495
Unique NameCX287495
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length528
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287495 vs. ExPASy Swiss-Prot
Match: ODBA_DICDI (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.047e-26
Identity = 53/119 (44.54%), Postives = 78/119 (65.55%), Query Frame = 3
Query:   57 PFPCQALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYPSN 413
            P   +A+TYRVGHH+TSDDS++YR V+EI  W+  ++P++R R ++   GWW+   E E  ++ R  +  +L  AEK  KP I+++FTDVYD    NL EQ+  L E +K +P +YP N
Sbjct:  312 PVLIEAMTYRVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHKGWWSDAQEKETIANARTTVRESLVNAEKQYKPSINEIFTDVYDKPTPNLIEQQKELIEHLKLYPDEYPLN 430          
BLAST of CX287495 vs. ExPASy Swiss-Prot
Match: ODBA_PANTR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.512e-25
Identity = 50/117 (42.74%), Postives = 77/117 (65.81%), Query Frame = 3
Query:   57 PFPCQALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 407
            PF  +A+TYR+GHH+TSDDS+ YR VDE+ +W     PV+R R ++ S GWW+ + E   R   RK+++ A ++AE+  KP  + LF+DVY   P+ LR+Q+ SL   ++ + + YP
Sbjct:  323 PFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPVSRLRHYLLSQGWWDEEQEKAWRKQSRKKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 439          
BLAST of CX287495 vs. ExPASy Swiss-Prot
Match: ODBA_BOVIN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.512e-25
Identity = 49/117 (41.88%), Postives = 77/117 (65.81%), Query Frame = 3
Query:   57 PFPCQALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 407
            PF  +A+TYR+GHH+TSDDS+ YR VDE+ +W     P++R R  ++S GWW+ + E   R   RK+++ A ++AE+  KP  S +F+DVY   P+ LR+Q+ SL   ++ + + YP
Sbjct:  333 PFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHHLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLIFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 449          
BLAST of CX287495 vs. ExPASy Swiss-Prot
Match: ODBA_RAT (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.580e-25
Identity = 49/117 (41.88%), Postives = 77/117 (65.81%), Query Frame = 3
Query:   57 PFPCQALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 407
            PF  +A+TYR+GHH+TSDDS+ YR VDE+ +W     P++R R+++ + GWW+ + E   R   RK+++ A ++AE+  KP  S LF+DVY   P+ LR Q+ SL   ++ + + YP
Sbjct:  319 PFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQLRRQQESLARHLQTYGEHYP 435          
BLAST of CX287495 vs. ExPASy Swiss-Prot
Match: ODBA_MOUSE (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.580e-25
Identity = 49/117 (41.88%), Postives = 77/117 (65.81%), Query Frame = 3
Query:   57 PFPCQALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 407
            PF  +A+TYR+GHH+TSDDS+ YR VDE+ +W     P++R R+++ + GWW+ + E   R   RK+++ A ++AE+  KP  S LF+DVY   P+ LR Q+ SL   ++ + + YP
Sbjct:  320 PFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQLRRQQESLARHLQTYGEHYP 436          
BLAST of CX287495 vs. ExPASy Swiss-Prot
Match: ODBA_MACFA (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.580e-25
Identity = 49/117 (41.88%), Postives = 77/117 (65.81%), Query Frame = 3
Query:   57 PFPCQALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 407
            PF  +A+TYR+GHH+TSDDS+ YR VDE+ +W     P++R R ++ S GWW+ + E   R   RK+++ A ++AE+  KP  + LF+DVY   P+ LR+Q+ SL   ++ + + YP
Sbjct:  323 PFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRKKVMKAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 439          
BLAST of CX287495 vs. ExPASy Swiss-Prot
Match: ODBA_HUMAN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 4.400e-25
Identity = 48/117 (41.03%), Postives = 77/117 (65.81%), Query Frame = 3
Query:   57 PFPCQALTYRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKKHPQDYP 407
            PF  +A+TYR+GHH+TSDDS+ YR VDE+ +W     P++R R ++ S GWW+ + E   R   R++++ A ++AE+  KP  + LF+DVY   P+ LR+Q+ SL   ++ + + YP
Sbjct:  323 PFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYP 439          
BLAST of CX287495 vs. ExPASy Swiss-Prot
Match: ODBA_THET2 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1757 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.760e-17
Identity = 39/101 (38.61%), Postives = 66/101 (65.35%), Query Frame = 3
Query:   81 YRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 383
            YR G H+++DD ++YRP +E+ +WR  +DP+ RFR+++E+ G WN + E ++R  +R ++   L+EAE+A   P   +F DV+   P +L  QE  L+E +
Sbjct:  268 YRYGPHSSADDDSRYRPKEEVAFWRK-KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFADVFAEKPWHLLRQEALLKEEL 367          
BLAST of CX287495 vs. ExPASy Swiss-Prot
Match: ODBA_THET8 (2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0229 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.523e-17
Identity = 39/101 (38.61%), Postives = 66/101 (65.35%), Query Frame = 3
Query:   81 YRVGHHTTSDDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETI 383
            YR G H+++DD ++YRP +E+ +WR  +DP+ RFR+++E+ G WN + E ++R  +R ++   L+EAE+A   P   +F DV+   P +L  QE  L+E +
Sbjct:  268 YRYGPHSSADDDSRYRPKEEVAFWRK-KDPIPRFRRFLEARGLWNEEWEEDVREEIRAELERGLKEAEEAGPVPPEWMFEDVFAEKPWHLLRQEALLKEEL 367          
BLAST of CX287495 vs. ExPASy Swiss-Prot
Match: ODPA_STAES (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.318e-16
Identity = 44/112 (39.29%), Postives = 64/112 (57.14%), Query Frame = 3
Query:   57 PFPCQALTYRVGHHTTS-DDSTKYRPVDEIEWWRTTQDPVTRFRKWIESNGWWNGDIESELRSSVRKQILHALQEAEKAEKPPISDLFTDVYDVSPSNLREQEHSLRETIKK 389
            P   + LTYR G HT + DD T+YR  DE   W   +DP+ RFRK++E+ G WN D E+E+    + +I  A++EA+  EK  ++ L   +Y+  P NL EQ    +E   K
Sbjct:  260 PTVIETLTYRYGPHTMAGDDPTRYRTSDEDAEWEK-KDPLVRFRKYLEAKGLWNEDKENEVVERAKSEIKAAIKEADNTEKQTVTSLMDIMYEEMPQNLAEQYEIYKEKESK 370          
The following BLAST results are available for this feature:
BLAST of CX287495 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ODBA_DICDI3.047e-2644.542-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_PANTR1.512e-2542.742-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_BOVIN1.512e-2541.882-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_RAT2.580e-2541.882-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MOUSE2.580e-2541.882-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MACFA2.580e-2541.882-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_HUMAN4.400e-2541.032-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_THET25.760e-1738.612-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODBA_THET87.523e-1738.612-oxoisovalerate dehydrogenase subunit alpha OS=Th... [more]
ODPA_STAES8.318e-1639.29Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionC01010B09SK Veg1 Citrus clementina cDNA clone C01010B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287495 ID=CX287495; Name=CX287495; organism=Citrus clementina; type=EST; length=528bp
ATTTTCTTAAGCGTTATGTGAGGCATGAGTGACTGGTGCTTTGATGTTTT
CTTTAACCTTTCCCATGCCAGGCTCTTACATATCGAGTAGGACACCACAC
AACATCAGATGATTCCACTAAGTACCGCCCAGTTGATGAGATTGAATGGT
GGAGAACAACTCAAGACCCTGTTACAAGATTTAGAAAGTGGATAGAAAGC
AATGGTTGGTGGAATGGTGACATTGAGTCAGAGCTCAGAAGCAGTGTGAG
GAAGCAGATATTACATGCACTTCAAGAAGCTGAAAAAGCGGAGAAACCTC
CAATTTCAGACTTGTTTACCGATGTATATGATGTTTCTCCTTCTAACCTC
CGCGAGCAAGAGCACTCATTAAGAGAGACCATCAAAAAGCACCCACAAGA
CTATCCCTCAAATGTTCCTATTTAGTTTAGTAAGTGTACTGATTAAGTGC
AACTGCAGATAGCAAACATTTATCTCTGTGAAATTTGTACTTTTGATCTT
TGAGTACATTTGGTTTAATAAATCAAGT
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