CX287503

Overview
NameCX287503
Unique NameCX287503
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length522
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15052 contig Ccv1_Contig15052:16..537. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX287503 vs. ExPASy Swiss-Prot
Match: SPOR1_IPOBA (Sporamin A OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.088e-11
Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 1 
Query:   85 ASESEPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGKNGQCPTDVIQLSPKD-KRGKNLVLLP---NDNSIIVRESTNIKLKFSRVSSLQQCNKDSLWKVDNDNASLGKQFITIGE-GKTCQNLFKLEKVSASIFDMKI 501
            AS   P+LD+ G++V +   YY+VSA+WG   GG   A      +C TDVI +SP D   G  + + P   +  S +V  ST    +F+ +++ + C  +  W + +D+AS G+ F+  GE      N FK+E V A++   K+
Sbjct:   37 ASSETPVLDINGDEVRAGGNYYMVSAIWGAGGGGLRLAHLDMMSKCATDVI-VSPNDLDNGDPITITPATADPESTVVMASTYQTFRFN-IATNKLCVNNVNWGIQHDSAS-GQYFLKAGEFVSDNSNQFKIELVDANLNSYKL 177
The following BLAST results are available for this feature:
BLAST of CX287503 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SPOR1_IPOBA2.088e-1133.33Sporamin A OS=Ipomoea batatas PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC01010C06SK Veg1 Citrus clementina cDNA clone C01010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287503 ID=CX287503; Name=CX287503; organism=Citrus clementina; type=EST; length=522bp
AAAAAAAATAAACAAATGAAGACTTCCTTAGTAACAACACTCTCCTTCCT
TATACTTGCTTTGACCACAAAACCTCAGTTGGGCGCCTCAGAATCTGAAC
CTATCTTAGATGTCTATGGCAACCAGGTGGACTCCAGCCACAGGTATTAT
CTTGTCTCAGCACTCTGGGGAGTTAAAACCGGCGGTGGAATTAGCGCGGA
CAAAGGCAAAAATGGACAGTGTCCAACGGATGTTATCCAATTAAGTCCTA
AGGACAAAAGGGGAAAGAATTTAGTTTTACTTCCGAATGACAATTCCATA
ATTGTCCGGGAGTCCACTAATATTAAATTGAAATTCTCAAGAGTTTCTTC
TCTTCAGCAGTGTAACAAAGATTCGTTGTGGAAAGTTGACAACGATAACG
CTTCATTAGGAAAGCAGTTTATAACAATCGGTGAAGGTAAAACGTGTCAA
AATTTGTTTAAACTTGAGAAAGTTAGTGCATCAATATTTGATATGAAAAT
AGCACTAGACATTCCCTGTCTA
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