CX287507

Overview
NameCX287507
Unique NameCX287507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig55 contig Ccv1_Contig55:1..558. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287507 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 4.945e-49
Identity = 94/158 (59.49%), Postives = 115/158 (72.78%), Query Frame = 2
Query:   83 MPEKITAENILDNLVETISDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDI 556
            MP+K   E+++ +LV+  ++ VQK K               RFNRLF RQKP+HH+LGGGKSADVLLWRNKKISASVLMGATAIWVLFEW+N+HFL++VC+AL+LGM+AQF W N SG  NRS S+VPR VLP + FA +G  V   VN  L  LQD+
Sbjct:    1 MPDKNIVEDVIGDLVDNFTETVQKNKHGSSFFEQEDSVSS-RFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDL 157          
BLAST of CX287507 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.980e-25
Identity = 56/114 (49.12%), Postives = 75/114 (65.79%), Query Frame = 2
Query:  215 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDI 556
            RLFGR+KPVH +LGGG  ADV LWR+KK+SASVL  ATAIWVLFE + YHFL++VC  L+  + A F   N     N++P K+P   +  E F  I + +   +N+A  +L+ I
Sbjct:   51 RLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSI 164          
BLAST of CX287507 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.504e-25
Identity = 48/114 (42.11%), Postives = 73/114 (64.04%), Query Frame = 2
Query:  215 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDI 556
            RLFGR++PVH +LGGGK AD+ +W+NKK+S  VL GATA WV+FE + YH LT++C  +++ +   F W N +   N+SP K+P   +P E    + + +   +N     L++I
Sbjct:   72 RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREI 185          
BLAST of CX287507 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.892e-24
Identity = 51/114 (44.74%), Postives = 76/114 (66.67%), Query Frame = 2
Query:  215 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDI 556
            R+FGR+KPVH +LGGGK ADV LWR+KK+S +VL  ATAIWVLFE + YH L+++C   +L +   F W N   L N++  ++P   +P E F  + +++   +N+A  +L+ I
Sbjct:   51 RMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSI 164          
BLAST of CX287507 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.191e-24
Identity = 45/114 (39.47%), Postives = 72/114 (63.16%), Query Frame = 2
Query:  215 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDI 556
            RLFGR++PVH +LGGGK AD+ +W++KK+S  V  GAT  WVLFE + YH LT++C  +++ +   F W N +   ++SP K+P   +P E    + + +   +N  +  L++I
Sbjct:   68 RLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREI 181          
BLAST of CX287507 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.313e-22
Identity = 55/156 (35.26%), Postives = 78/156 (50.00%), Query Frame = 2
Query:  104 ENILDNLVETI-----SDKVQKQKXXXXXXXXXXXXXXXRFNRLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDI 556
            E+IL+ +VE I     S  +                   +  RLFGR+KPVH +LGGGK AD+ LWRNKK+S  VL   TA WVLFE   YH L  +C   +  + A F W N     ++S   +P   +P +    + + +   +N  L LL++I
Sbjct:    9 ESILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNI 164          
BLAST of CX287507 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.958e-21
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 2
Query:  215 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDI 556
            RLFGR++P+H L GGGK AD+ LWRNKK+S  VL  AT  W+LFE L Y+ LT+     +L +   F W + S   ++SP  +P   +P +V   + + +   +N    +L+DI
Sbjct:   47 RLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDI 160          
BLAST of CX287507 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.006e-17
Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  215 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDI 556
            +LF RQ+ +H + GGGK AD+LLWR  KI+A++++G + +W L E + Y+F+T++C A +  ML  F W   S   N     +P  VL    F  +  +     N+ L  L D+
Sbjct:   22 KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDV 135          
BLAST of CX287507 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 2
Query:  215 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDI 556
            R+FGR++P+H +LGGGK ADVLLWR+KK++  +L   T IW+LF +     LT +C   +L +L  F W   S   N+SP  +    +P +      + +   +N A   L+ I
Sbjct:   53 RMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLW---SNALNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSI 163          
BLAST of CX287507 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.811e-14
Identity = 37/114 (32.46%), Postives = 62/114 (54.39%), Query Frame = 2
Query:  215 RLFGRQKPVHHLLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWLNYHFLTIVCFALVLGMLAQFFWVNISGLFNRSPSKVPRFVLPPEVFANIGTTVCANVNEALGLLQDI 556
            RL GRQ  VH  +GGGK+AD+LLWR + +S  V++ +T  W++FE+    FL++    L++ ++  F    +S   NR    +P  VL  E+  +   +    +N  L +  D+
Sbjct:   24 RLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDV 137          
The following BLAST results are available for this feature:
BLAST of CX287507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RTNLH_ARATH4.945e-4959.49Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH4.980e-2549.12Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH6.504e-2542.11Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH1.892e-2444.74Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH7.191e-2439.47Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH2.313e-2235.26Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.958e-2140.35Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH1.006e-1735.96Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH1.112e-1636.84Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLP_ARATH8.811e-1432.46Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC01010C10SK Veg1 Citrus clementina cDNA clone C01010C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287507 ID=CX287507; Name=CX287507; organism=Citrus clementina; type=EST; length=558bp
CTCGTGCCGAATTCGGCACGAGGCTCCAATCATCTACTCAACAGACCCCA
TTTTTTTCCTTTTTTCTTGAAAGATTGGAAGAATGCCAGAGAAAATAACA
GCAGAGAACATTTTGGACAACCTTGTGGAAACCATTTCAGATAAGGTTCA
AAAGCAGAAAGCTGTATCATTTTTTGAGGAAGAGACATCAAGCTCAGTCA
CTGCTCGTTTCAATCGGCTGTTCGGACGCCAGAAACCTGTCCACCATCTT
TTGGGCGGTGGAAAATCTGCTGATGTTTTGTTATGGAGGAACAAGAAGAT
ATCAGCCAGTGTATTAATGGGTGCAACAGCAATTTGGGTGCTCTTTGAAT
GGCTTAACTACCATTTTCTGACCATTGTATGCTTTGCTTTGGTCCTTGGC
ATGCTTGCTCAATTTTTTTGGGTAAACATTTCGGGCTTATTTAACAGATC
ACCATCAAAAGTTCCCCGCTTTGTTCTGCCTCCAGAGGTATTTGCTAACA
TTGGCACAACAGTTTGTGCTAATGTTAATGAAGCTCTGGGGCTACTTCAG
GACATTGC
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