CX287509

Overview
NameCX287509
Unique NameCX287509
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length601
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287509 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.004e-24
Identity = 67/153 (43.79%), Postives = 88/153 (57.52%), Query Frame = -1
Query:  215 SHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQEKEPALQCDNSEQDDT-QP-----STSIE----------------IKNLREELENVKTRMAALQKDYSELQREYEKLSNKHKIVSS--WSLGWRKI 601
            +HP+LSEH+R+RLC++M+C+KLS+DAC HAAQN+RLPLR VVQVLFSEQVK+  A+            E   T QP      T IE                I  L+ ELE VKT+   LQ +   +QR++EK        SS  W+ GW+K+
Sbjct:  554 AHPTLSEHERKRLCRVMDCQKLSMDACMHAAQNERLPLRVVVQVLFSEQVKISNALANTSLKESTTLGEAMGTYQPMIPNRKTLIEATPQSFQARWAAAKKDINTLKFELETVKTKYVELQNEMEVMQRQFEKTGKVKNTPSSSAWTSGWKKL 706          
BLAST of CX287509 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.093e-22
Identity = 60/167 (35.93%), Postives = 90/167 (53.89%), Query Frame = -1
Query:  215 SHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQEKEPALQCDNS----EQDDTQPST-------------------SIEIKNLREELENVKTRMAALQKDYSELQREYE---------------KLSNKHKIVSSWSLGWRKI 601
            +HP+L+EH+R+RLC++M+C+KLS DAC HAAQN+RLPLR VVQVLF+EQVK+  A+     AL+  +S    +     P+T                     +I  L+ ELE++K +   LQ +   LQ++ +               K   +    S+WS GW+K+
Sbjct:  557 AHPTLTEHERKRLCRVMDCQKLSFDACMHAAQNERLPLRVVVQVLFTEQVKISNALASSSAALRSSSSAPGADAAPAMPTTRRQLLDGTPQSFQEGWAAAKKDINTLKFELESMKAKYLELQHEMDALQKQVDGRGGGAPSPAAAKIGKQQQQGTSASAWSSGWKKL 723          
BLAST of CX287509 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16
Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = -1
Query:  227 HPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQEKEPALQCDNSEQDDTQP-------------------STSI-EIKNLREELENVKTRMAALQKDYSELQREYEKLSNKHKIVSSWSLG 598
            HP L+E +R  LC+L++C+KLSL+ACTHAAQN+RLPLR +VQVLF EQ+++RT++      L  DN +    Q                    +T++ E + L+  +++++ R+  L+K+ S +++E EKL    K   S S G
Sbjct:  459 HPWLAETERENLCRLLDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSV--AGCFLVSDNLDGGSRQLRSGGYVGGPNEGGGGGGGWATAVRENQVLKVGMDSMRMRVCELEKECSNMRQEIEKLGKTTKGGGSASNG 600          
BLAST of CX287509 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 52/172 (30.23%), Postives = 97/172 (56.40%), Query Frame = -1
Query:  140 SHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAM------QEKEPALQCDNS------------EQDDTQPSTSIEIKNLREELENVKTRMAALQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTGR 601
            +H  LS+ D+++L KL++ +KLS +A  HAAQN+RLPL+++VQVL+ EQ+K+R+++      +E +P  Q   S               D   S   E + L+ EL  ++ R+  L+K++  ++R+ ++ S+  K +SS+S    K+    HS +    + + +Q+F +  +
Sbjct:  434 AHQGLSDSDKKKLSKLIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLKLRSSLCSSYSDEEPKPKQQQQQSWRINSGALSATMSPKDNYASLRRENRELKLELARLRMRLNDLEKEHICMKRDMQR-SHSRKFMSSFSKKMGKLSFFGHSSSRGSSSPS-KQSFRTDSK 603          
The following BLAST results are available for this feature:
BLAST of CX287509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RPT3_ARATH1.004e-2443.79Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ2.093e-2235.93Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
Y1044_ARATH1.314e-1637.50BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
Y5880_ARATH1.230e-1430.23BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC01010C12SK Veg1 Citrus clementina cDNA clone C01010C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287509 ID=CX287509; Name=CX287509; organism=Citrus clementina; type=EST; length=601bp
CTCGTGCCGTTTTTTTGGTTCTAATTTATCTTTATACAAGAGGTGCAATA
ATACAATCAATGTATAGGTGCAACAAATATTGGGGCGTAAATGTTAAGAA
CATCTAGGGGAGTGATGGTCTTCGTCTGAAGCTGGTTTGCCGGCCAGTTG
AATTGAATGTCTGCCGTCGATTGCCAGTTTCATCTGCATCGGCCTTTGAG
TGGAATGAGTTCTTGATCTTTCTCCAACCTAAACTCCAACTGGATACAAT
CTTATGTTTGTTGCTCAGCTTCTCATATTCTCGCTGCAGCTCAGAATAGT
CTTTTTGTAGCGCTGCCATTCTTGTCTTTACATTCTCAAGTTCTTCTCTT
AGGTTCTTAATCTCTATGCTTGTAGATGGCTGGGTATCATCCTGTTCGGA
GTTATCGCATTGTAATGCTGGCTCCTTCTCTTGCATTGCTGTCCTCATCT
TTACTTGCTCCGAGAATAACACCTGGACAACAGTTCTAAGAGGTAATCGG
TCATTTTGTGCGGCATGGGTGCATGCATCAAGTGACAATTTCTCACAGTT
CATTAATTTGCACAGCCTTCTCCGATCATGTTCAGATAGTGACGGATGTG
A
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