CX287509
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287509 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.004e-24 Identity = 67/153 (43.79%), Postives = 88/153 (57.52%), Query Frame = -1 Query: 215 SHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQEKEPALQCDNSEQDDT-QP-----STSIE----------------IKNLREELENVKTRMAALQKDYSELQREYEKLSNKHKIVSS--WSLGWRKI 601 +HP+LSEH+R+RLC++M+C+KLS+DAC HAAQN+RLPLR VVQVLFSEQVK+ A+ E T QP T IE I L+ ELE VKT+ LQ + +QR++EK SS W+ GW+K+ Sbjct: 554 AHPTLSEHERKRLCRVMDCQKLSMDACMHAAQNERLPLRVVVQVLFSEQVKISNALANTSLKESTTLGEAMGTYQPMIPNRKTLIEATPQSFQARWAAAKKDINTLKFELETVKTKYVELQNEMEVMQRQFEKTGKVKNTPSSSAWTSGWKKL 706
BLAST of CX287509 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.093e-22 Identity = 60/167 (35.93%), Postives = 90/167 (53.89%), Query Frame = -1 Query: 215 SHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQEKEPALQCDNS----EQDDTQPST-------------------SIEIKNLREELENVKTRMAALQKDYSELQREYE---------------KLSNKHKIVSSWSLGWRKI 601 +HP+L+EH+R+RLC++M+C+KLS DAC HAAQN+RLPLR VVQVLF+EQVK+ A+ AL+ +S + P+T +I L+ ELE++K + LQ + LQ++ + K + S+WS GW+K+ Sbjct: 557 AHPTLTEHERKRLCRVMDCQKLSFDACMHAAQNERLPLRVVVQVLFTEQVKISNALASSSAALRSSSSAPGADAAPAMPTTRRQLLDGTPQSFQEGWAAAKKDINTLKFELESMKAKYLELQHEMDALQKQVDGRGGGAPSPAAAKIGKQQQQGTSASAWSSGWKKL 723
BLAST of CX287509 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 1.314e-16 Identity = 54/144 (37.50%), Postives = 85/144 (59.03%), Query Frame = -1 Query: 227 HPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAMQEKEPALQCDNSEQDDTQP-------------------STSI-EIKNLREELENVKTRMAALQKDYSELQREYEKLSNKHKIVSSWSLG 598 HP L+E +R LC+L++C+KLSL+ACTHAAQN+RLPLR +VQVLF EQ+++RT++ L DN + Q +T++ E + L+ +++++ R+ L+K+ S +++E EKL K S S G Sbjct: 459 HPWLAETERENLCRLLDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSV--AGCFLVSDNLDGGSRQLRSGGYVGGPNEGGGGGGGWATAVRENQVLKVGMDSMRMRVCELEKECSNMRQEIEKLGKTTKGGGSASNG 600
BLAST of CX287509 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14 Identity = 52/172 (30.23%), Postives = 97/172 (56.40%), Query Frame = -1 Query: 140 SHPSLSEHDRRRLCKLMNCEKLSLDACTHAAQNDRLPLRTVVQVLFSEQVKMRTAM------QEKEPALQCDNS------------EQDDTQPSTSIEIKNLREELENVKTRMAALQKDYSELQREYEKLSNKHKIVSSWSLGWRKIKNSFHSKADADETGNRRQTFNSTGR 601 +H LS+ D+++L KL++ +KLS +A HAAQN+RLPL+++VQVL+ EQ+K+R+++ +E +P Q S D S E + L+ EL ++ R+ L+K++ ++R+ ++ S+ K +SS+S K+ HS + + + +Q+F + + Sbjct: 434 AHQGLSDSDKKKLSKLIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLKLRSSLCSSYSDEEPKPKQQQQQSWRINSGALSATMSPKDNYASLRRENRELKLELARLRMRLNDLEKEHICMKRDMQR-SHSRKFMSSFSKKMGKLSFFGHSSSRGSSSPS-KQSFRTDSK 603 The following BLAST results are available for this feature:
BLAST of CX287509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287509 ID=CX287509; Name=CX287509; organism=Citrus clementina; type=EST; length=601bpback to top |