CX287514

Overview
NameCX287514
Unique NameCX287514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14291 contig Ccv1_Contig14291:19..645. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287514 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.374e-64
Identity = 122/150 (81.33%), Postives = 127/150 (84.67%), Query Frame = 2
Query:  188 PSRAHSRSILTVRAGATDXXXXXXXXXXN----EPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPT 625
            P ++ S +  TVRA  TD          N    E RETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV+EETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPC YPT
Sbjct:   42 PIKSRSAAYPTVRA-LTDGEYSSRRNNNNNNSGEERETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPT 190          
BLAST of CX287514 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.113e-29
Identity = 69/183 (37.70%), Postives = 109/183 (59.56%), Query Frame = 2
Query:   77 RTMATLYAPSILASKPLLSSRPQLTLGLRVGSPTLRLPSRAHSRSILTVR-----AGATDXXXXXXXXXXNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIP 610
            ++++ L+  S  +S PL  S P  +L L    P +   S      +++V+     A ++             P+ETI+L GCD+ HWL+V+E P    PTR+++I++Y+ TLA ++GS +EA+  +Y+ ST  Y  F   VSE+ S K K L  V WVLPDSY+DV+NKDYGG+ +++G+ +P
Sbjct:   16 KSLSFLFTRSFASSAPLAKS-PASSL-LSRSRPLVAAFSSVFRGGLVSVKGLSTQATSSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVP 195          
The following BLAST results are available for this feature:
BLAST of CX287514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DAG_ANTMA2.374e-6481.33DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
UMP1_ARATH1.113e-2937.70Uncharacterized protein At3g15000, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionC01010D05SK Veg1 Citrus clementina cDNA clone C01010D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287514 ID=CX287514; Name=CX287514; organism=Citrus clementina; type=EST; length=627bp
AAAAAATCTCTCAACATTTTCGGATTTTCTCCTCTCGTTATCTTGGCAGC
TTGGCTTTGGCACCAGCAGCAGCAAGAGAACAATGGCGACTCTGTACGCA
CCATCAATCCTCGCATCCAAACCCCTCCTCTCATCTCGCCCTCAACTCAC
TCTGGGCCTCCGAGTCGGCTCACCGACTCTCCGCCTCCCATCTCGCGCTC
ACTCGCGCTCGATCTTGACCGTCAGAGCTGGGGCAACGGACAGCGAGTAC
TCGTCCAAGAGAAGCAGCAGCAATGAGCCGAGGGAGACGATTATGTTACC
GGGATGTGACTACAACCACTGGCTTATTGTCATGGAGTTCCCCAAGGACC
CTGCTCCCACGAGAGAGCAGATGATTGAAACTTATCTCAATACTCTTGCC
ACTGTTCTTGGAAGCATGGAAGAAGCAAAGAAGAATATGTATGCTTTTAG
CACCACTACTTACACTGGATTCCAATGCACAGTATCCGAAGAAACCTCAG
AGAAATTCAAAGGCCTGCCTGGTGTTCTTTGGGTGTTGCCCGATTCATAC
ATAGATGTCAAAAATAAAGATTATGGAGGTGATAAATATGTCAATGGAGA
GATCATTCCCTGCACATATCCCACTTA
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