CX287521

Overview
NameCX287521
Unique NameCX287521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length555
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX287521 vs. ExPASy Swiss-Prot
Match: PP314_ARATH (Pentatricopeptide repeat-containing protein At4g16390, chloroplastic OS=Arabidopsis thaliana GN=P67 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 4.567e-47
Identity = 90/107 (84.11%), Postives = 98/107 (91.59%), Query Frame = -2 
Query:  237 RSPTQWSLHLKSLSLGAALTALHIWINDLSKA-LESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESRSSLVSVPA 554
            +S TQWSLHLKSLSLGAALTALH+W+NDLS+A LESGEEFPPLLGINTGHGKHKYSDKGLA+VFESHLKELNAPFH++PDKVGWFLTT  AAK+WLESR S   V A
Sbjct:  582 KSATQWSLHLKSLSLGAALTALHVWMNDLSEAALESGEEFPPLLGINTGHGKHKYSDKGLAAVFESHLKELNAPFHEAPDKVGWFLTTSVAAKAWLESRRSAGGVSA 688
[Close]
BLAST of CX287521 vs. ExPASy Swiss-Prot
Match: PP420_ARATH (Pentatricopeptide repeat-containing protein At5g46580, chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.610e-15
Identity = 43/94 (45.74%), Postives = 62/94 (65.96%), Query Frame = -2 
Query:  261 QWSLHLKSLSLGAALTALHIWINDLSKALESGEEFPPLLGINTGHGKHKYSDKGLASVFESHLKELNAPFHDSPDKVGWFLTTEAAAKSWLESR 542
            +WSL ++SLS+GAA TAL  W+  L+  ++  EE P L    TG G H++S +GLA+ F  HL++L+APF  S D+ G F+ T+    SWLES+
Sbjct:  611 EWSLDVRSLSVGAAETALEEWMRTLANIIKRQEELPELFLAQTGTGTHRFS-QGLANSFALHLQQLSAPFRQS-DRPGIFVATKEDLVSWLESK 702
The following BLAST results are available for this feature:
BLAST of CX287521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP314_ARATH4.567e-4784.11Pentatricopeptide repeat-containing protein At4g16... [more]
PP420_ARATH4.610e-1545.74Pentatricopeptide repeat-containing protein At5g46... [more]
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Properties
Property NameValue
Genbank descriptionC01010D12SK Veg1 Citrus clementina cDNA clone C01010D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287521 ID=CX287521; Name=CX287521; organism=Citrus clementina; type=EST; length=555bp
GTTTTTTTTTTTTTTTTTTAAGTACGAAATTTACATTTCCATAATTTCAT
TAGCTCTATATATAAAAATTCAAAGTATAAACAAAAAGTTATGGTCTGAT
AGAACAAAAATTCTTCCTCCGTCAAGAGACATATAGCCCAGAACATAAAA
AAAGGGGAGTTTGAGATGGCGAGCACATCATTGCTAAGCATACAACCTGA
TTCGGGAATGCCAGACACTTACGAGGCAGTCACCTTGGCAGGAACTGAGA
CCAGTGAGCTTCTAGACTCCAACCATGACTTGGCTGCAGCCTCTGTAGTC
AAAAACCAGCCAACCTTGTCTGGGGAATCATGAAAAGGGGCATTTAATTC
CTTCAAATGTGACTCGAAAACACTAGCTAATCCTTTGTCTGAGTACTTGT
GTTTCCCGTGCCCAGTATTGATACCAAGTAATGGCGGAAACTCTTCTCCA
GATTCCAGCGCTTTCGAAAGGTCATTTATCCAAATGTGTAATGCAGTCAG
TGCTGCTCCAAGCGAGAGACTCTTCAGATGTAAAGACCACTGAGTTGGAG
ACCTG
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