CX287529

Overview
NameCX287529
Unique NameCX287529
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length350
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig671 contig Ccv1_Contig671:472..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287529 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.919e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1
Query:   25 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 150
            SLLCDPNPNSPANSEAARMFSENKREYNRRVRE+VEQSWTAD
Sbjct:  111 SLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWTAD 152          
BLAST of CX287529 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.869e-17
Identity = 40/42 (95.24%), Postives = 42/42 (100.00%), Query Frame = 1
Query:   25 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 150
            SLLCDPNPNSPANSEAARMFSE+KREYNRRVRE+VEQSWTAD
Sbjct:  111 SLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWTAD 152          
BLAST of CX287529 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.441e-17
Identity = 39/42 (92.86%), Postives = 42/42 (100.00%), Query Frame = 1
Query:   25 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 150
            SLLCDPNPNSPANSEAARM+SENKREYNR+VRE+VEQSWTAD
Sbjct:  111 SLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWTAD 152          
BLAST of CX287529 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.277e-17
Identity = 38/42 (90.48%), Postives = 42/42 (100.00%), Query Frame = 1
Query:   25 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 150
            SLLCDPNPNSPANSEAARM+SE+KREYNRRVR++VEQSWTAD
Sbjct:  111 SLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWTAD 152          
BLAST of CX287529 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 1
Query:   25 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTA 147
            SLLCDPNPNSPANSE+AR+F ENKREYNR+V+EIVEQSW++
Sbjct:  111 SLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQSWSS 151          
BLAST of CX287529 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.127e-13
Identity = 33/39 (84.62%), Postives = 38/39 (97.44%), Query Frame = 1
Query:   25 SLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSW 141
            SLLCDPNP+SPAN+EAAR+FSENKREYNR+V EIVEQS+
Sbjct:  111 SLLCDPNPDSPANAEAARLFSENKREYNRKVIEIVEQSY 149          
The following BLAST results are available for this feature:
BLAST of CX287529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UBC2_MEDSA4.919e-1897.62Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_ARATH1.869e-1795.24Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC2_WHEAT2.441e-1792.86Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC1_ARATH9.277e-1790.48Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_DICDI1.134e-1482.93Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC3_ARATH8.127e-1384.62Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC01010E10SK Veg1 Citrus clementina cDNA clone C01010E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287529 ID=CX287529; Name=CX287529; organism=Citrus clementina; type=EST; length=350bp
CTCGTGCCGAATTCGGCACGAGGGTCATTGCTTTGTGACCCAAATCCAAA
CTCTCCTGCAAATTCGGAGGCAGCGCGGATGTTTAGCGAGAACAAGCGTG
AATACAATAGGAGAGTACGGGAAATTGTTGAGCAGAGTTGGACTGCTGAC
TAGTGGCAACTTGTTGGAATGTAGGGAACTTCAAAAGTAGTCCAATGGCT
TGTTCTAAATAACATTTAAGATTCAAAAGGTTGGTGGTGTGAACTCTTGA
CATGTTTTATGTTTGTTTCGGCTTATGAGGATGGATGGTTGGCCTCTTAT
TGTTAATTTCTCGTCTTTGGGTACATTGAACTCCAAAAAAAAAAAAAAAA
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