CX287533

Overview
NameCX287533
Unique NameCX287533
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length424
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14362 contig Ccv1_Contig14362:32..455. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX287533 vs. ExPASy Swiss-Prot
Match: METB_ARATH (Cystathionine gamma-synthase, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=2 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.277e-12
Identity = 38/64 (59.38%), Postives = 44/64 (68.75%), Query Frame = 2 
Query:  119 DPDFSGS--ARFDKPRISAARVIGASTASFSGVSSLIFRFPPNFVRQLSTKARRNCSNIGVAQI 304
            DPD  GS      + R+ A+  I +S    +G+SS I RFPPNFVRQLS KARRNCSNIGVAQI
Sbjct:   25 DPDLVGSPVGGSSRRRVHASAGISSSFTGDAGLSSRILRFPPNFVRQLSIKARRNCSNIGVAQI 88
The following BLAST results are available for this feature:
BLAST of CX287533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
METB_ARATH5.277e-1259.38Cystathionine gamma-synthase, chloroplastic OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionC01010F02SK Veg1 Citrus clementina cDNA clone C01010F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287533 ID=CX287533; Name=CX287533; organism=Citrus clementina; type=EST; length=424bp
AGAAGACCGAGAGAGCAAAGCCGCCGTTCAATACGACGTCGTAATGGCCG
TGTCCTCATGTTCGAGTCAAAAAATTTTGTCCTTCTCTTCTTCATGTTCG
TCTTTTGAGTGCCGGTCCGATCCCGACTTCTCGGGCTCCGCTCGGTTTGA
TAAACCGAGGATCTCGGCGGCGCGAGTCATTGGAGCCTCGACGGCGTCGT
TTAGCGGCGTGTCGTCTCTGATTTTCAGGTTTCCGCCGAACTTCGTACGC
CAGCTTAGCACGAAGGCCAGGAGGAACTGCAGCAACATCGGCGTGGCGCA
AATCGTGGCGGCTTCGTGGTCGAACAGTGTGGGTTCCGGCTCTAACTCGG
CGGCGGCTACAGCCGCTTCCGCTGCCCCGGCCCCGCCCGCCCCCGTCGAG
ATTACGAGCGGCGATGACATCGCG
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