CX287542

Overview
NameCX287542
Unique NameCX287542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length402
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig963 contig Ccv1_Contig963:183..584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287542 vs. ExPASy Swiss-Prot
Match: YAB2_ARATH (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.340e-20
Identity = 56/107 (52.34%), Postives = 73/107 (68.22%), Query Frame = 2
Query:   95 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSAL---QAVPL-QDPQLQKQHINLEDSIT-KDCGSSSKCNKFSSAFEIAEHETPRM 400
            MS+D +SERVCYVHC++C TILAVSVP +SLF +VTVRCGHC NLL++N+  +L    A P+ QD Q  +QH      +T KDC SSS+    ++  E  + E PRM
Sbjct:    1 MSVDFSSERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTT--SLVTRKDCASSSRST--NNLSENIDREAPRM 103          
BLAST of CX287542 vs. ExPASy Swiss-Prot
Match: YAB2_ORYSJ (Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.225e-18
Identity = 45/100 (45.00%), Postives = 68/100 (68.00%), Query Frame = 2
Query:  110 ASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQD---PQLQKQHINLEDSITKDCGSSSKCNKFSSAFEIAEHETPRM 400
            A E VCYVHCN+CNTI AVSVP +S+ NIVTVRCGHC +LL+VN+   +QA+P +D     L+  +++  ++ + + GSSS+  +    F  ++++T  M
Sbjct:    8 APEHVCYVHCNFCNTIFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYS-EYGSSSRYGRVPMMF--SKNDTEHM 104          
BLAST of CX287542 vs. ExPASy Swiss-Prot
Match: YAB6_ORYSJ (Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.366e-17
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 2
Query:   95 MSLDLA-SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP-LQDPQLQKQHINLEDSITKDC 331
            MS  +A +E+VCYVHCN+CNTILAVSVP +S+ NIVTVRCGHC NLL+VN+   + + P LQD      H +L++S    C
Sbjct:    1 MSAQIAPAEQVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQD----HHHHHLQESGLSGC 77          
BLAST of CX287542 vs. ExPASy Swiss-Prot
Match: YAB5_ARATH (Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.366e-17
Identity = 41/80 (51.25%), Postives = 57/80 (71.25%), Query Frame = 2
Query:  107 LASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQKQHINLEDSITKDCGSSSK 346
            +A+E++CY+ CN+CN ILAV+VPCSSLF+IVTVRCGHC NL +VNM +ALQ+       L + +    +    + GSSS+
Sbjct:    6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQS-------LSRPNFQATNYAVPEYGSSSR 78          
BLAST of CX287542 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.616e-16
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 2
Query:  113 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQ 289
            +E++CYVHCN C+TILAV VPCSSLF  VTVRCGHCANLL+VN+   L   P   P  Q
Sbjct:   22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQ 80          
BLAST of CX287542 vs. ExPASy Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.616e-16
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 2
Query:  113 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQ 289
            +E++CYVHCN C+TILAV VPCSSLF  VTVRCGHCANLL+VN+   L   P   P  Q
Sbjct:   22 TEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQ 80          
BLAST of CX287542 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSJ (Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.610e-16
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 2
Query:  116 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM 244
            E++CYVHCN+C+TILAV VPCSSLF  VTVRCGHCANLL+VN+
Sbjct:   29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNL 71          
BLAST of CX287542 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSI (Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.610e-16
Identity = 34/43 (79.07%), Postives = 40/43 (93.02%), Query Frame = 2
Query:  116 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM 244
            E++CYVHCN+C+TILAV VPCSSLF  VTVRCGHCANLL+VN+
Sbjct:   29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNL 71          
BLAST of CX287542 vs. ExPASy Swiss-Prot
Match: YAB1_ORYSJ (Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.892e-15
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 2
Query:   95 MSLDLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQLQKQ 295
            MS+   SE VCYV+CNYCNTIL V+VP +  +NIVTVRCGHC  +L++++    QA  +QD Q+Q +
Sbjct:    1 MSVQFTSEHVCYVNCNYCNTILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQNR 67          
BLAST of CX287542 vs. ExPASy Swiss-Prot
Match: YAB3_ORYSJ (Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.176e-14
Identity = 32/47 (68.09%), Postives = 39/47 (82.98%), Query Frame = 2
Query:  104 DLASERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM 244
            D   E++CYVHC+YC+T+L VSVP SSLF  VTVRCGHC++LL VNM
Sbjct:   54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNM 100          
The following BLAST results are available for this feature:
BLAST of CX287542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
YAB2_ARATH1.340e-2052.34Putative axial regulator YABBY 2 OS=Arabidopsis th... [more]
YAB2_ORYSJ6.225e-1845.00Protein YABBY 2 OS=Oryza sativa subsp. japonica GN... [more]
YAB6_ORYSJ2.366e-1755.56Protein YABBY 6 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ARATH2.366e-1751.25Axial regulator YABBY 5 OS=Arabidopsis thaliana GN... [more]
YAB4_ORYSJ2.616e-1664.41Protein YABBY 4 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ORYSI2.616e-1664.41Protein YABBY 4 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB5_ORYSJ7.610e-1679.07Protein YABBY 5 OS=Oryza sativa subsp. japonica GN... [more]
YAB5_ORYSI7.610e-1679.07Protein YABBY 5 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB1_ORYSJ2.892e-1553.73Protein YABBY 1 OS=Oryza sativa subsp. japonica GN... [more]
YAB3_ORYSJ4.176e-1468.09Protein YABBY 3 OS=Oryza sativa subsp. japonica GN... [more]

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Properties
Property NameValue
Genbank descriptionC01010F11SK Veg1 Citrus clementina cDNA clone C01010F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287542 ID=CX287542; Name=CX287542; organism=Citrus clementina; type=EST; length=402bp
TTTCTTTTAATTTGTTCAAGATTTGATTGATTAATAATAGAACTCTTTGC
GTTTCTATTGTTTGTCGGTACATTTCTTGATCTCCACTGAAACTATGTCA
CTGGACTTGGCATCTGAACGTGTTTGTTATGTTCACTGCAACTACTGCAA
CACCATTTTAGCGGTGAGTGTTCCTTGCTCAAGTTTGTTCAACATTGTGA
CTGTAAGATGTGGGCATTGTGCCAATTTGCTAAATGTAAACATGGTATCT
GCACTTCAAGCAGTTCCTCTTCAAGACCCTCAGTTGCAGAAACAACACAT
AAACCTAGAAGATTCCATTACTAAGGATTGTGGATCATCTTCAAAATGCA
ATAAGTTTTCTTCAGCATTTGAGATTGCAGAGCATGAAACTCCTCGAATG
CC
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