CX287608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX287608 vs. ExPASy Swiss-Prot
Match: LSM1_HUMAN (U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1 PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.489e-13 Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = -2 Query: 343 SFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTHVSVAEIKRAQKAERE 558 S DQFAN VL ER+ VG Y DIP G++V+RGENVVL+GE+DLE++ P L VS+ EI Q+ E++ Sbjct: 34 SIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTP-LQQVSIEEILEEQRVEQQ 104
BLAST of CX287608 vs. ExPASy Swiss-Prot
Match: LSM1_BOVIN (U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 4.489e-13 Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = -2 Query: 343 SFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTHVSVAEIKRAQKAERE 558 S DQFAN VL ER+ VG Y DIP G++V+RGENVVL+GE+DLE++ P L VS+ EI Q+ E++ Sbjct: 34 SIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTP-LQQVSIEEILEEQRVEQQ 104
BLAST of CX287608 vs. ExPASy Swiss-Prot
Match: LSM1_MOUSE (U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.000e-12 Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = -2 Query: 343 SFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTHVSVAEIKRAQKAERE 558 S DQFAN VL ER+ VG Y DIP G++V+RGENVVL+GE+DLE++ P L VS+ EI Q+ +++ Sbjct: 34 SIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTP-LQQVSIEEILEEQRVQQQ 104
BLAST of CX287608 vs. ExPASy Swiss-Prot
Match: LSM1_DICDI (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.106e-11 Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = -2 Query: 307 SFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTHVSVAEIKRAQKAEREASDLKGSMRKRM 558 +FDQFAN VL+ ER+ VGD Y D LGL+ IRG+NVV++GE+D +++ L +S EI +A E+ + + +++R+ Sbjct: 29 TFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVILGEIDPDKEVQEKKLKKISWDEITKAAALEKIKKEEEEQLKRRI 112
BLAST of CX287608 vs. ExPASy Swiss-Prot
Match: LSM1_SCHPO (U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe GN=lsm1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 5.488e-11 Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = -2 Query: 298 SFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERD-ELPPHLTHVSVAEIKRAQKAEREASDLKGSMRKRMEFL 558 SFDQFAN +L+ ER+ V D+Y DI G+Y++RGENVVL+GELDL+++ + L + E+ K E + K ++R++ ++L Sbjct: 40 SFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGENVVLLGELDLDKEYDAVKQLRRMPAEELYPLAKLHEE--EKKKNIREKGKYL 125 The following BLAST results are available for this feature:
BLAST of CX287608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX287608 ID=CX287608; Name=CX287608; organism=Citrus clementina; type=EST; length=562bpback to top |