CX287608

Overview
NameCX287608
Unique NameCX287608
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length562
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX287608 vs. ExPASy Swiss-Prot
Match: LSM1_HUMAN (U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.489e-13
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = -2
Query:  343 SFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTHVSVAEIKRAQKAERE 558
            S DQFAN VL    ER+ VG  Y DIP G++V+RGENVVL+GE+DLE++   P L  VS+ EI   Q+ E++
Sbjct:   34 SIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTP-LQQVSIEEILEEQRVEQQ 104          
BLAST of CX287608 vs. ExPASy Swiss-Prot
Match: LSM1_BOVIN (U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.489e-13
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = -2
Query:  343 SFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTHVSVAEIKRAQKAERE 558
            S DQFAN VL    ER+ VG  Y DIP G++V+RGENVVL+GE+DLE++   P L  VS+ EI   Q+ E++
Sbjct:   34 SIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTP-LQQVSIEEILEEQRVEQQ 104          
BLAST of CX287608 vs. ExPASy Swiss-Prot
Match: LSM1_MOUSE (U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.000e-12
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = -2
Query:  343 SFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTHVSVAEIKRAQKAERE 558
            S DQFAN VL    ER+ VG  Y DIP G++V+RGENVVL+GE+DLE++   P L  VS+ EI   Q+ +++
Sbjct:   34 SIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTP-LQQVSIEEILEEQRVQQQ 104          
BLAST of CX287608 vs. ExPASy Swiss-Prot
Match: LSM1_DICDI (Probable U6 snRNA-associated Sm-like protein LSm1 OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.106e-11
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = -2
Query:  307 SFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERDELPPHLTHVSVAEIKRAQKAEREASDLKGSMRKRM 558
            +FDQFAN VL+   ER+ VGD Y D  LGL+ IRG+NVV++GE+D +++     L  +S  EI +A   E+   + +  +++R+
Sbjct:   29 TFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVILGEIDPDKEVQEKKLKKISWDEITKAAALEKIKKEEEEQLKRRI 112          
BLAST of CX287608 vs. ExPASy Swiss-Prot
Match: LSM1_SCHPO (U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces pombe GN=lsm1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.488e-11
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = -2
Query:  298 SFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLERD-ELPPHLTHVSVAEIKRAQKAEREASDLKGSMRKRMEFL 558
            SFDQFAN +L+   ER+ V D+Y DI  G+Y++RGENVVL+GELDL+++ +    L  +   E+    K   E  + K ++R++ ++L
Sbjct:   40 SFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGENVVLLGELDLDKEYDAVKQLRRMPAEELYPLAKLHEE--EKKKNIREKGKYL 125          
The following BLAST results are available for this feature:
BLAST of CX287608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LSM1_HUMAN4.489e-1352.78U6 snRNA-associated Sm-like protein LSm1 OS=Homo s... [more]
LSM1_BOVIN4.489e-1352.78U6 snRNA-associated Sm-like protein LSm1 OS=Bos ta... [more]
LSM1_MOUSE1.000e-1251.39U6 snRNA-associated Sm-like protein LSm1 OS=Mus mu... [more]
LSM1_DICDI1.106e-1140.48Probable U6 snRNA-associated Sm-like protein LSm1 ... [more]
LSM1_SCHPO5.488e-1140.91U6 snRNA-associated Sm-like protein LSm1 OS=Schizo... [more]
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Properties
Property NameValue
Genbank descriptionC01011D07SK Veg1 Citrus clementina cDNA clone C01011D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287608 ID=CX287608; Name=CX287608; organism=Citrus clementina; type=EST; length=562bp
CTCGTGCCGTTTTTTTTTTTTTTTTTCATCTGTGAATGTTTTCACTGCCT
TCACTGCATAAAATTCTCTGAATTCAGAAAAAAAAAAAAGTGGATTAAGC
GTACCTAATCTTGAGAGTATAAAGCGATGAAACCAGTACCAACTGCAAAT
TGCAAATCATACATAGTACAAGCATTCTTGACTAATAATATTACAAAGAT
TTGCCAGGGAGCATCGAATGCTAATCAATTCTCCTGCGCCACCAACCGCT
TAATATTTTGCGAAACATTGGGTGCACGATGCATGCTAGTCCAGATCCAG
AAACTCCATTCTTTTCCGCATTGAACCTTTAAGATCTGATGCCTCCCTCT
CTGCTTTCTGAGCTCTTTTAATTTCAGCAACTGAAACATGGGTCAGATGT
GGAGGAAGCTCATCCCTCTCCAAGTCCAGCTCACCAATTAAAACAACATT
CTCCCCACGAATTACATACAGGCCTAAAGGAATGTCACAATAAAGGTCAC
CAACAATAACTCTCTCACATGCACCCTCAAGGACAGCATTGGCAAATTGA
TCAAAGGAACAA
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