CX287613

Overview
NameCX287613
Unique NameCX287613
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX287613_ssr102 microsatellite CX287613_ssr102:102..113. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13179 contig Ccv1_Contig13179:64..482. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287613 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.621e-40
Identity = 78/101 (77.23%), Postives = 80/101 (79.21%), Query Frame = 3
Query:  117 FSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 419
            FS KDY DPPP PL D  ELGKWSFYRA+IAEFIA            IGYKSQTDP LN DQC GVG+LGIAWAFGGMIFILVYCTAGISGGHINPAVTFG
Sbjct:   12 FSGKDYQDPPPEPLFDATELGKWSFYRALIAEFIATLLFLYVTIMTVIGYKSQTDPALNPDQCTGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 112          
BLAST of CX287613 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 7.138e-38
Identity = 81/119 (68.07%), Postives = 85/119 (71.43%), Query Frame = 3
Query:   69 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 419
            M KD+E +        FSAKDY DPPPAPLID EEL KWS YRAVIAEFIA            IGYK Q+D  +NT    C GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG
Sbjct:    1 MAKDIEASAPEGGE--FSAKDYTDPPPAPLIDVEELTKWSLYRAVIAEFIATLLFLYITVATVIGYKHQSDATVNTTDAACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 117          
BLAST of CX287613 vs. ExPASy Swiss-Prot
Match: PIP23_ORYSJ (Probable aquaporin PIP2-3 OS=Oryza sativa subsp. japonica GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.626e-37
Identity = 78/119 (65.55%), Postives = 83/119 (69.75%), Query Frame = 3
Query:   69 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 419
            M KD+E A        + AKDY DPPPAPLID EEL KWS YRAVIAEF+A            IGYK Q+DP  N     C GVGILGIAWAFGGMIFILVYCTAG+SGGHINPAVTFG
Sbjct:    1 MAKDIEAAAAAEGGE-YMAKDYSDPPPAPLIDAEELTKWSLYRAVIAEFVATLLFLYITVATVIGYKHQSDPGANAADAACSGVGILGIAWAFGGMIFILVYCTAGVSGGHINPAVTFG 118          
BLAST of CX287613 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 80/119 (67.23%), Postives = 85/119 (71.43%), Query Frame = 3
Query:   69 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 419
            M KD+E +        FSAKDY DPPPAPLID EEL +WS YRAVIAEFIA            IGYK QTD + +     CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG
Sbjct:    1 MAKDIEASGPEAGE--FSAKDYTDPPPAPLIDAEELTQWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGPDAACGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 117          
BLAST of CX287613 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 80/119 (67.23%), Postives = 84/119 (70.59%), Query Frame = 3
Query:   69 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 419
            MGKD EV         F+AKDY DPPPAPLID  ELG WS YRAVIAEFIA            IGYK QTD + +     CGGVG+LGIAWAFGGMIFILVYCTAGISGGHINPAVTFG
Sbjct:    1 MGKD-EVMESGGAAGEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 118          
BLAST of CX287613 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 78/119 (65.55%), Postives = 84/119 (70.59%), Query Frame = 3
Query:   69 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 419
            MGKD +V         F+AKDY DPPPAPLID  ELG WS YRAVIAEFIA            IGYK QTD + +     CGGVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFG
Sbjct:    1 MGKD-DVIESGAGGGEFAAKDYTDPPPAPLIDAAELGSWSLYRAVIAEFIATLLFLYITVATVIGYKHQTDASASGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 118          
BLAST of CX287613 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.296e-36
Identity = 78/118 (66.10%), Postives = 83/118 (70.34%), Query Frame = 3
Query:   69 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNL-NTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 419
            M KDVE          +SAKDYHDPPPAPLID +EL KWS YRA IAEFIA            IGYK Q+D  +    +C GVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG
Sbjct:    1 MAKDVEQVTEQGE---YSAKDYHDPPPAPLIDPDELTKWSLYRAAIAEFIATLLFLYITVLTIIGYKRQSDTKIPGNTECDGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 115          
BLAST of CX287613 vs. ExPASy Swiss-Prot
Match: PIP25_ORYSJ (Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica GN=PIP2-5 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.999e-36
Identity = 74/119 (62.18%), Postives = 84/119 (70.59%), Query Frame = 3
Query:   69 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQ--CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 419
            MGK+ +V            +DY DPPPAPL+D +ELG+WS YRAVIAEF+A            IGYK QTD + + D   CGGVG+LGIAWAFGGMIFILVYCTAGISGGHINPAVTFG
Sbjct:    1 MGKEADVEAG-------GVRDYEDPPPAPLVDIDELGRWSLYRAVIAEFVATLLFLYVTVATVIGYKHQTDASASGDDAACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 112          
BLAST of CX287613 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.999e-36
Identity = 77/121 (63.64%), Postives = 84/121 (69.42%), Query Frame = 3
Query:   69 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLN----TDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 419
            MGKD +V         F+AKDY DPPPAPL+D  ELG WS YRAVIAEFIA            IGYK QTD + +       CGGVG+LGIAWAFGGMIF+LVYCTAGISGGHINPAVTFG
Sbjct:    1 MGKD-DVVQSGAGGGEFAAKDYTDPPPAPLVDAAELGSWSLYRAVIAEFIATLLFLYVTVATVIGYKHQTDASASGAGADAACGGVGVLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFG 120          
BLAST of CX287613 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.999e-36
Identity = 76/117 (64.96%), Postives = 80/117 (68.38%), Query Frame = 3
Query:   69 MGKDVEVAXXXXXXXXFSAKDYHDPPPAPLIDFEELGKWSFYRAVIAEFIAXXXXXXXXXXXXIGYKSQTDPNLNTDQCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 419
            M KDVE          F  +DY DPPPAP ID  EL KWSFYRAVIAEF+A            IGYK Q+D +     CGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG
Sbjct:    1 MAKDVEAVPGEG----FQTRDYQDPPPAPFIDGAELKKWSFYRAVIAEFVATLLFLYITVLTVIGYKIQSDTDAGGVDCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFG 113          
The following BLAST results are available for this feature:
BLAST of CX287613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP25_ARATH2.621e-4077.23Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP22_ORYSJ7.138e-3868.07Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP23_ORYSJ4.626e-3765.55Probable aquaporin PIP2-3 OS=Oryza sativa subsp. j... [more]
PIP24_MAIZE6.042e-3767.23Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP21_ORYSJ6.042e-3767.23Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP21_MAIZE1.758e-3665.55Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP27_MAIZE2.296e-3666.10Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP25_ORYSJ2.999e-3662.18Aquaporin PIP2-5 OS=Oryza sativa subsp. japonica G... [more]
PIP22_MAIZE2.999e-3663.64Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP21_ARATH2.999e-3664.96Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]

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Properties
Property NameValue
Genbank descriptionC01011D12SK Veg1 Citrus clementina cDNA clone C01011D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287613 ID=CX287613; Name=CX287613; organism=Citrus clementina; type=EST; length=419bp
AACACAACAGTCGTAGCTCTTGTTTCTCCCTCTCGTTTAATTAACAAAAC
AAAAATAAAAGGGAAAAAATGGGGAAGGATGTTGAAGTTGCTGAGCAGCA
AGGCGGCGGCGGCGAGTTCTCAGCCAAGGACTACCACGACCCCCCTCCGG
CGCCGCTGATCGATTTCGAGGAGCTGGGCAAGTGGTCTTTTTACAGAGCT
GTAATTGCTGAGTTCATCGCTACGCTTTTGTTTCTTTATGTTACCGTCTT
GACTGTGATTGGATACAAGAGCCAGACTGATCCCAACTTGAATACCGATC
AGTGTGGTGGCGTTGGCATTCTTGGCATCGCTTGGGCCTTTGGTGGCATG
ATCTTCATTCTCGTTTACTGCACAGCCGGTATTTCTGGTGGACATATCAA
CCCGGCTGTGACATTCGGA
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