CX287615

Overview
NameCX287615
Unique NameCX287615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length421
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11964 contig Ccv1_Contig11964:45..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287615 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.649e-26
Identity = 60/101 (59.41%), Postives = 79/101 (78.22%), Query Frame = 3
Query:  120 ASSSLFTPSTITVRKHQISPSSISFQGLRPLNTR-AKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTH 419
            ++S+L +P+T +      +P+SISF GLRPL    + + LPKL+T+ +++S   ++AEL+  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG TH
Sbjct:    4 SASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTH 104          
BLAST of CX287615 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.639e-16
Identity = 49/79 (62.03%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  189 SFQGLRPL--NTRAKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTH 419
            SF GLRPL  N  +      L+ S+ R S    +AEL+  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++H
Sbjct:   36 SFSGLRPLKLNISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSH 112          
BLAST of CX287615 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.091e-13
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 3
Query:  288 ELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 404
            ELN  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
BLAST of CX287615 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.312e-12
Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 3
Query:  171 ISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTH 419
            +SP +++   L P + RA      ++  A+R+     +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG TH
Sbjct:    9 LSPPAVAGLRLAP-SPRAAASFRGVSPPARRSV--AARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTH 87          
The following BLAST results are available for this feature:
BLAST of CX287615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAG_ARATH1.649e-2659.41Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL2.639e-1662.03Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA2.091e-1394.87Photosystem I reaction center subunit V (Fragment)... [more]
PSAG_HORVU2.312e-1251.81Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionC01011E02SK Veg1 Citrus clementina cDNA clone C01011E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287615 ID=CX287615; Name=CX287615; organism=Citrus clementina; type=EST; length=421bp
CGGCACGAGGCTTGCAAAAATTTATCATAATCCAGGAACTCAAAAACTCC
ATCATCCATCAAGGCATCAACCAGAACACAAAAAAGAAGGAAAAAGAGGG
GAAAAAAAGAAAAATGGCAGCCTCATCCTCCTTGTTCACACCCTCCACCA
TCACCGTCCGAAAACACCAAATTTCACCCTCCAGCATCTCATTCCAAGGC
CTAAGACCCCTCAACACCAGGGCCAAAACCCCCCTCCCCAAGCTCGCCAC
CTCCGCCAAAAGAAACAGCTTCGGCGGCATTAAAGCTGAGCTGAACACAC
CACTTGTCATCAGCCTCAGCACTGGCCTCTCCTTGTTCTTGGGCAGGTTC
GTCTTCTTCAACTTCCAAAGAGAGAACGTGGCCAAACAAGGCTTGCCCGA
GCAGAATGGAGTCACCCACTT
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