CX287616

Overview
NameCX287616
Unique NameCX287616
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length451
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13848 contig Ccv1_Contig13848:803..1253. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 4.591e-55
Identity = 106/127 (83.46%), Postives = 117/127 (92.13%), Query Frame = -3
Query:   60 KIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAATENSEIVDA 440
            K+VVSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LGQPNA+DGT+  V  V PE +LAA +++E  DA
Sbjct:  232 KVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTY--VGGVHPELILAAADSAETADA 356          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 1.745e-54
Identity = 109/127 (85.83%), Postives = 114/127 (89.76%), Query Frame = -3
Query:   60 KIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAATENSEIVDA 440
            KIVVSSCGHDGPFGATGVKRLKSIGMID VPGMKALDMNTAEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALKALG PNAIDGT   V  + PE VLAA +++E VDA
Sbjct:  225 KIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTL--VGNLSPELVLAAADSAETVDA 349          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 3.886e-54
Identity = 105/127 (82.68%), Postives = 116/127 (91.34%), Query Frame = -3
Query:   60 KIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAATENSEIVDA 440
            K+VVSSCGHDGPFGATGVK L+SIGMID+VPGMKALDMN AEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG PNA+DG++  V  + PE +LAA +++EI DA
Sbjct:  228 KVVVSSCGHDGPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSY--VGGIHPELILAAADSAEIADA 352          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 9.573e-53
Identity = 101/127 (79.53%), Postives = 113/127 (88.98%), Query Frame = -3
Query:   60 KIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAATENSEIVDA 440
            K+VVSSCGHDGPFGATGVKRL+ IGMI +VPGMKALDMN AED IVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG+PNA+DGT  EV+    E  + A+++ E+VDA
Sbjct:  228 KVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTIPEVSPALREEFVIASKDDEVVDA 354          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 3.079e-51
Identity = 101/127 (79.53%), Postives = 112/127 (88.19%), Query Frame = -3
Query:   60 KIVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDGTFSEVTEVQPEFVLAATENSEIVDA 440
            K+VVSSCGHDGPFGATGVKRL+ IGMI +VPGMKALDMNTAED IVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALG+PNA+DGT S       E ++ A ++ E+VDA
Sbjct:  231 KVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLR---EELMIAYKDDEVVDA 354          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.392e-27
Identity = 60/93 (64.52%), Postives = 75/93 (80.65%), Query Frame = -3
Query:  159 IVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKAL 437
            +V+S+ GHD P GA  VKRL S+G I+ + GM+ LDMN AEDAIV+ TREIVPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK +
Sbjct:  223 LVISTTGHDAPMGAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALKVI 315          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 9.022e-27
Identity = 56/95 (58.95%), Postives = 74/95 (77.89%), Query Frame = -3
Query:  153 IVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQ 437
            +++S+ GHDGPFGA   KRL S+G +D + GM+ LDMN+AEDAIV+ TRE+  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK   +
Sbjct:  226 VIISTTGHDGPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALKVFDE 320          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.178e-26
Identity = 59/91 (64.84%), Postives = 73/91 (80.22%), Query Frame = -3
Query:  165 IVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 437
            +++S+ GHDGP GA  VKRL S+  I+ + GM+ LDMN AEDAIV+ TREIVPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  219 LIISTTGHDGPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.902e-25
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = -3
Query:  138 IVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAID 437
            +VVS+ GHDGPFGA  VKRL S  ++ ++  M+ LDMN AED IV+ TRE+ PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++
Sbjct:  225 LVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVN 324          
BLAST of CX287616 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.457e-24
Identity = 54/101 (53.47%), Postives = 74/101 (73.27%), Query Frame = -3
Query:  135 IVVSSCGHDGPFGATGVKRLKSIGMIDSVPGMKALDMNTAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGQPNAIDG 437
            +V S  GHDGPFGA  VKR+ S G+ + +  M+ LDM  AED I   TREI+PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL++L +    +G
Sbjct:  231 LVCSFAGHDGPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEG 331          
The following BLAST results are available for this feature:
BLAST of CX287616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
THI4_CITSI4.591e-5583.46Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ARATH1.745e-5485.83Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI4_ALNGL3.886e-5482.68Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI42_MAIZE9.573e-5379.53Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI41_MAIZE3.079e-5179.53Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI4_FUSSH1.392e-2764.52Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR9.022e-2758.95Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_FUSOX1.178e-2664.84Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI2_SCHPO2.902e-2558.00Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_UROFA2.457e-2453.47Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]

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Properties
Property NameValue
Genbank descriptionC01011E03SK Veg1 Citrus clementina cDNA clone C01011E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX287616 ID=CX287616; Name=CX287616; organism=Citrus clementina; type=EST; length=451bp
TCGGCACGAGGTTGAATTCTCATCAAAATGTACATAATTCTCAGATTTTA
TAATTTTTAAGCATCAACAATCTCGCTGTTCTCAGTGGCCGCAAGGACAA
ACTCTGGCTGTACTTCCGTAACTTCACTGAATGTCCCATCTATCGCATTC
GGCTGCCCCAATGCCTTCAACGCCAAATGGGCTGCCTTCTGCCCTGAAAT
CATCATGGCCCCGAATGTAGGTCCCATTCTAGGGGCACCGTCGATCTCTG
CGACTTCCATGCCCGTGACAATCATGCCAGGCACGATCTCCCTGGTAAGC
CTAACGATAGCATCCTCTGCAGTGTTCATATCGAGAGCTTTCATTCCGGG
GACGGAGTCAATCATGCCAATACTCTTAAGCCTCTTAACACCGGTAGCCC
CAAAAGGGCCGTCATGGCCACACGAGCTGACCACAATCTTGCGGCACGAG
G
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