CX288476

Overview
NameCX288476
Unique NameCX288476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288476 vs. ExPASy Swiss-Prot
Match: GLR37_ARATH (Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=GLR3.7 PE=2 SV=2)

HSP 1 Score: 283.108 bits (723), Expect = 9.386e-76
Identity = 137/217 (63.13%), Postives = 173/217 (79.72%), Query Frame = 3
Query:    9 SQFSPGNS*REKC*SFPTRLEASNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEE-HDSHKVQGYCIDIFLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFK 656
            S  +P     +K  SF +  +  +ITWPGG  E PRGWVIAD+A PL+I VPRR SFV FVTEE + SH++QG+CID+F+EALK VPY VPY FE FG+G S+P+Y+ L++MV + V+DAAVGDIAIV +R+K+VDFSQPY STGLV+V P N+  A+ W+FL+PFT  +WCV   SF++IAVVIWILEHR+N+DFRGPPRRQ++TM LFSFSTLFK
Sbjct:  413 SVVAPKTRHSQKKTSFVSDEKLGDITWPGGGREKPRGWVIADSADPLKIVVPRRVSFVEFVTEEKNSSHRIQGFCIDVFIEALKFVPYSVPYIFEPFGNGHSSPNYNHLIQMVTDGVYDAAVGDIAIVPSRSKLVDFSQPYASTGLVVVIPANDDNAT-WIFLRPFTSRLWCVVLVSFLVIAVVIWILEHRINEDFRGPPRRQLSTMLLFSFSTLFK 628          
BLAST of CX288476 vs. ExPASy Swiss-Prot
Match: GLR32_ARATH (Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=GLR3.2 PE=1 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.605e-67
Identity = 120/198 (60.61%), Postives = 151/198 (76.26%), Query Frame = 3
Query:   75 SNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDIFLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTIRK 668
            +N+TWPGG +ETPRGWV  +N R LRIGVP RASF  FV+    S+KVQGY ID+F  A+KL+ Y VP++F LFGDGL NP+++  V  V   VFDA VGDIAIVT RT+IVDF+QPYI +GLV+VAP+     + W FL+PFT  MW VTAA F+++  VIWILEHR+ND+FRGPPR+QI T+  FSFST+F + R+
Sbjct:  444 NNVTWPGGTSETPRGWVFPNNGRRLRIGVPDRASFKEFVSRLDGSNKVQGYAIDVFEAAVKLISYPVPHEFVLFGDGLKNPNFNEFVNNVTIGVFDAVVGDIAIVTKRTRIVDFTQPYIESGLVVVAPVTKLNDTPWAFLRPFTPPMWAVTAAFFLIVGSVIWILEHRINDEFRGPPRKQIVTILWFSFSTMFFSHRE 641          
BLAST of CX288476 vs. ExPASy Swiss-Prot
Match: GLR31_ARATH (Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=GLR3.1 PE=2 SV=2)

HSP 1 Score: 249.595 bits (636), Expect = 1.150e-65
Identity = 118/200 (59.00%), Postives = 153/200 (76.50%), Query Frame = 3
Query:   75 SNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEH-DSHKVQGYCIDIFLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDV-FDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTIRK 668
            +++TWPGG + TPRGW+  +N R LRIGVP RASF  FV+  +  S+KVQGYCID+F  A+KL+ Y VP++F  FGDGL+NP+Y+ LV  V   V FDA VGDIAIVT RT+IVDF+QPYI +GLV+VAP+     + W FL+PFT+ MW VTA+ FV++   IWILEHR+ND+FRGPPRRQI T+  F+FST+F + R+
Sbjct:  442 NSVTWPGGTSVTPRGWIFRNNGRRLRIGVPDRASFKDFVSRVNGSSNKVQGYCIDVFEAAVKLLSYPVPHEFIFFGDGLTNPNYNELVNKVTTGVDFDAVVGDIAIVTKRTRIVDFTQPYIESGLVVVAPVTRLNENPWAFLRPFTLPMWAVTASFFVIVGAAIWILEHRINDEFRGPPRRQIITILWFTFSTMFFSHRE 641          
BLAST of CX288476 vs. ExPASy Swiss-Prot
Match: GLR35_ARATH (Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=GLR3.5 PE=2 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 4.370e-65
Identity = 110/198 (55.56%), Postives = 148/198 (74.75%), Query Frame = 3
Query:   75 SNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDIFLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTIRK 668
            + I WPG   + PRGWV  +N +PL+IGVP R S+  + +++ +   V+G+CIDIF  A++L+PY VP  + L+GDG  NPSYD L+  VA ++FD AVGD+ I+TNRTK VDF+QP+I +GLV+VAP+   K+S W FLKPFT+EMW VT A F+ +  VIWILEHR N++FRGPPRRQI T+F FSFST+F + R+
Sbjct:  463 NEIIWPGEVIKPPRGWVFPENGKPLKIGVPNRVSYKNYASKDKNPLGVKGFCIDIFEAAIQLLPYPVPRTYILYGDGKKNPSYDNLISEVAANIFDVAVGDVTIITNRTKFVDFTQPFIESGLVVVAPVKGAKSSPWSFLKPFTIEMWAVTGALFLFVGAVIWILEHRFNEEFRGPPRRQIITVFWFSFSTMFFSHRE 660          
BLAST of CX288476 vs. ExPASy Swiss-Prot
Match: GLR34_ARATH (Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=GLR3.4 PE=2 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.076e-63
Identity = 110/196 (56.12%), Postives = 145/196 (73.98%), Query Frame = 3
Query:   81 ITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDIFLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTIRK 668
            I +PG  T+ PRGWV  +N +PLRIGVP R S+  +V+++ +   V+GYCID+F  A++L+PY VP  + L+GDG  NPSYD LV  V  D FD AVGDI IVTNRT+ VDF+QP+I +GLV+VAP+   K+S W FLKPFT+EMW VT   F+ +  ++WILEHR N +FRGPPRRQ+ T+F FSFST+F + R+
Sbjct:  472 IIYPGEVTKPPRGWVFPNNGKPLRIGVPNRVSYTDYVSKDKNPPGVRGYCIDVFEAAIELLPYPVPRTYILYGDGKRNPSYDNLVNEVVADNFDVAVGDITIVTNRTRYVDFTQPFIESGLVVVAPVKEAKSSPWSFLKPFTIEMWAVTGGFFLFVGAMVWILEHRFNQEFRGPPRRQLITIFWFSFSTMFFSHRE 667          
BLAST of CX288476 vs. ExPASy Swiss-Prot
Match: GLR31_ORYSJ (Glutamate receptor 3.1 OS=Oryza sativa subsp. japonica GN=GLR3.1 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 2.323e-58
Identity = 95/192 (49.48%), Postives = 136/192 (70.83%), Query Frame = 3
Query:   78 NITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDIFLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLF 653
            ++ WPG     PRGWV  +N   ++IGVP R S+  FV+ + ++  V+G CID+F+ A+ L+ Y VPY+F  FG+   NPSY  L+  +  D FDA VGD+ I+TNRTK+VDF+QPY+S+GLV++  +    +  W FL+PFT++MW VT   F++I  V+W+LEHR+ND+FRGPP +Q+ T+F FSFSTLF
Sbjct:  446 DVIWPGETINKPRGWVFPNNGNEIKIGVPDRVSYRQFVSVDSETGMVRGLCIDVFVAAINLLAYPVPYRFVPFGNNRENPSYSELINKIITDDFDAVVGDVTIITNRTKVVDFTQPYVSSGLVVLTSVKRQNSGGWAFLQPFTIKMWTVTGLFFLIIGTVVWMLEHRINDEFRGPPAKQLITVFWFSFSTLF 637          
BLAST of CX288476 vs. ExPASy Swiss-Prot
Match: GLR33_ARATH (Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=GLR3.3 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.380e-57
Identity = 100/199 (50.25%), Postives = 137/199 (68.84%), Query Frame = 3
Query:   60 TRLEASNITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKV-QGYCIDIFLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLF 653
            T  +  ++ WPG     PRGWV ++N + L+IGVP R S+  FV++   +  + +G+CID+F  A+ L+PY VP KF  +G+G  NPSY  +V+M+    FD  VGD+AIVTNRTKIVDF+QPY ++GLV+VAP     + AW FL+PF   MW VT   F+ + +V+WILEHR ND+FRGPP+RQ  T+  FSFST+F
Sbjct:  437 TSPKLKHVIWPGETFTKPRGWVFSNNGKELKIGVPLRVSYKEFVSQIRGTENMFKGFCIDVFTAAVNLLPYAVPVKFIPYGNGKENPSYTHMVEMITTGNFDGVVGDVAIVTNRTKIVDFTQPYAASGLVVVAPFKKLNSGAWAFLRPFNRLMWAVTGCCFLFVGIVVWILEHRTNDEFRGPPKRQCVTILWFSFSTMF 635          
BLAST of CX288476 vs. ExPASy Swiss-Prot
Match: GLR36_ARATH (Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.471e-57
Identity = 99/197 (50.25%), Postives = 140/197 (71.07%), Query Frame = 3
Query:   78 NITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHKVQGYCIDIFLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTLFKTIRK 668
            ++ WPG   + PRGWV ++N R LRIGVP R  F   V+ + +   + G+C+D+F+ A+ L+PY VP++   FG+G  NPS   LV+++   V+DA VGDI I+T RTK+ DF+QPY+ +GLV+VAP+    +SA  FL+PFT +MW + AASF+++  VIW LEH+ ND+FRGPPRRQ+ T F FSFSTLF + R+
Sbjct:  435 SVVWPGHSIKIPRGWVFSNNGRHLRIGVPNRYRFEEVVSVKSNG-MITGFCVDVFIAAINLLPYAVPFELVAFGNGHDNPSNSELVRLITTGVYDAGVGDITIITERTKMADFTQPYVESGLVVVAPVRKLGSSAMAFLRPFTPQMWLIAAASFLIVGAVIWCLEHKHNDEFRGPPRRQVITTFWFSFSTLFFSHRE 630          
BLAST of CX288476 vs. ExPASy Swiss-Prot
Match: GLR27_ARATH (Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 3.047e-42
Identity = 84/194 (43.30%), Postives = 120/194 (61.86%), Query Frame = 3
Query:   81 ITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHD----SHKVQGYCIDIFLEALKLVPYDVPYKFELFGDGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASAWVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPPRRQIATMFLFSFSTL 650
            + WPG   + P+GW I  N + LR+G+P +  F+ FV  + D    +    GYCI+IF   LK +PY V  K+  F     N  YD +V  V    +DA VGD+ IV NR+  VDF+ PY  +G+ ++ P+ ++K + WVFL+P+++++W  TA  FV I  ++WILEHRVN DFRGPP  QI T F F+FST+
Sbjct:  440 VIWPGKSKDVPKGWQIPTNGKMLRVGIPVKKGFLEFVDAKIDPISNAMTPTGYCIEIFEAVLKKLPYSVIPKYIAFLSPDEN--YDEMVYQVYTGAYDAVVGDVTIVANRSLYVDFTLPYTESGVSMMVPLKDNK-NTWVFLRPWSLDLWVTTACFFVFIGFIVWILEHRVNTDFRGPPHHQIGTSFWFAFSTM 630          
BLAST of CX288476 vs. ExPASy Swiss-Prot
Match: GLR26_ARATH (Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.865e-40
Identity = 86/199 (43.22%), Postives = 121/199 (60.80%), Query Frame = 3
Query:   81 ITWPGGKTETPRGWVIADNARPLRIGVPRRASFVGFVTEEHDSHK----VQGYCIDIFLEALKLVPYDVPYKFELFG--DGLSNPSYDGLVKMVANDVFDAAVGDIAIVTNRTKIVDFSQPYISTGLVIVAPINNHKASA-WVFLKPFTVEMWCVTAASFVMIAVVIWILEHRVNDDFRGPP-RRQIATMFLFSFSTLF 653
            I WPG     P+GW    NA+ LRI VP++  F  FV    D++     + G+CID+F  A++ +PY VPY++  F   DG    SYD +V  V    FD AVGD  I+ NR+  VDF+ PY  TG+V+V P+ + +    WVFLKP T E+W +TAASF+ I +++WI E++ + DFR      +I+ +F FSFSTLF
Sbjct:  440 IIWPGDTIFVPKGWEFPTNAKKLRIAVPKKDGFNNFVEVTKDANTNAPTITGFCIDVFDTAMRQMPYAVPYEYIPFETPDGKPRGSYDEMVYHVFLGEFDGAVGDTTILANRSTYVDFALPYSETGIVVVVPVKDEREKGKWVFLKPLTRELWFLTAASFLYIGIMVWIFEYQASGDFRKQSIINKISNVFYFSFSTLF 638          
The following BLAST results are available for this feature:
BLAST of CX288476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GLR37_ARATH9.386e-7663.13Glutamate receptor 3.7 OS=Arabidopsis thaliana GN=... [more]
GLR32_ARATH1.605e-6760.61Glutamate receptor 3.2 OS=Arabidopsis thaliana GN=... [more]
GLR31_ARATH1.150e-6559.00Glutamate receptor 3.1 OS=Arabidopsis thaliana GN=... [more]
GLR35_ARATH4.370e-6555.56Glutamate receptor 3.5 OS=Arabidopsis thaliana GN=... [more]
GLR34_ARATH1.076e-6356.12Glutamate receptor 3.4 OS=Arabidopsis thaliana GN=... [more]
GLR31_ORYSJ2.323e-5849.48Glutamate receptor 3.1 OS=Oryza sativa subsp. japo... [more]
GLR33_ARATH4.380e-5750.25Glutamate receptor 3.3 OS=Arabidopsis thaliana GN=... [more]
GLR36_ARATH7.471e-5750.25Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=... [more]
GLR27_ARATH3.047e-4243.30Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=... [more]
GLR26_ARATH4.865e-4043.22Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionC01020H02SK Veg1 Citrus clementina cDNA clone C01020H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288476 ID=CX288476; Name=CX288476; organism=Citrus clementina; type=EST; length=686bp
CGAGGGTTTCTCAGTTTTCCCCCGGAAACTCTTAAAGGGAAAAATGTTAG
TCATTCCCAACTCGATTGGAAGCTTCAAATATTACTTGGCCTGGTGGAAA
AACTGAGACACCACGCGGTTGGGTAATTGCAGATAATGCAAGACCATTGA
GAATTGGAGTGCCAAGGAGAGCCAGCTTTGTTGGATTTGTTACAGAGGAG
CACGATAGTCATAAAGTCCAAGGATACTGTATTGATATTTTCCTTGAAGC
ACTGAAACTAGTCCCATATGATGTGCCTTACAAATTTGAGCTTTTTGGTG
ATGGTCTGTCTAATCCTAGTTATGATGGGCTTGTGAAAATGGTTGCAAAT
GATGTGTTTGATGCAGCTGTTGGGGACATTGCAATTGTCACAAATCGAAC
AAAAATTGTGGATTTTTCTCAGCCTTATATTTCTACCGGTCTTGTCATCG
TGGCTCCTATTAACAATCACAAAGCAAGTGCTTGGGTATTTCTCAAGCCA
TTTACAGTGGAGATGTGGTGTGTCACTGCAGCTTCTTTCGTGATGATTGC
AGTTGTTATTTGGATTCTTGAGCATCGAGTCAATGATGATTTTCGAGGTC
CTCCTAGAAGACAGATTGCCACAATGTTTTTGTTCAGTTTCTCAACATTG
TTTAAGACAATCAGGAAGCTACTGTAAGCTCACTGG
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