CX288477

Overview
NameCX288477
Unique NameCX288477
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.641e-33
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = -3
Query:  371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592
            +VLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK+GKGKG+IGSASQEF
Sbjct:   66 EVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = -3
Query:  371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592
            +VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP K+GK KGDIGSASQEF
Sbjct:   69 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = -3
Query:  371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592
            +VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP K+GK KGDIGSASQEF
Sbjct:   69 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.143e-31
Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = -3
Query:  371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592
            +VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLPKK GK KG+IGSASQEF
Sbjct:   65 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.651e-30
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = -3
Query:  371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592
            +VLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNIHQTLLPKK GK K DIGSASQEF
Sbjct:   65 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.651e-30
Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = -3
Query:  371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592
            +VLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNIHQTLLPKK GK K DIGSASQEF
Sbjct:   65 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = -3
Query:  371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592
            +VLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNI Q LLPKK G GKGDIGSASQEF
Sbjct:   65 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = -3
Query:  371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592
            +VLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNI Q LLPKK G GKGDIGSASQEF
Sbjct:   65 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = -3
Query:  374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592
            ++LELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GKG      ASQE
Sbjct:   61 EILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSGKG----DKASQE 129          
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.309e-24
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = -3
Query:  395 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGD 592
            +VLELAGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH  LLPKK   GKG+
Sbjct:   61 EVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGE 126          
The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
H2AX_CICAR4.641e-3394.59Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ARATH3.929e-3293.24Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ARATH3.929e-3293.24Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2AX_PICAB1.143e-3191.89Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AXB_ORYSJ1.651e-3090.54Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI1.651e-3090.54Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AXA_ORYSJ1.183e-2889.19Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI1.183e-2889.19Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A2_PICGU1.768e-2476.71Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=... [more]
H2A_CHLRE2.309e-2483.33Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]

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Properties
Property NameValue
Genbank descriptionC01020H03SK Veg1 Citrus clementina cDNA clone C01020H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bp
GAGGGTTTCATGGCTGGGTTCAATAAGAGTGAGGCTGACTCTCAAGTGAA
ATGGGCAGCACTGAATACAGTTCTTATATCACACCACCACATACAAGTTA
GATCAAGACTAGCAGAGGCAATGGCATTGGGAAGATCTATTGGCTCTTGT
ATTCATTCAATAGAGAATGCCCTATCAGGAGAATTAATCTAGGTTCTATA
TTGTTCAATAACAAATAACATGTGGAAAGCAATGGAATAATCTCATCAAG
TTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAGAAAA
AAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGTAAAA
TTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGTCACC
CTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTGGGTA
AAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAATTCC
TCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGTTCTT
CTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTGTAGATTGA
AACACATAAAATCATTTCCCATATTACAAGGCTGGAAAAATCACAATCTT
GAACCATTTAATCAGTTTCAAGAAACAATTTTTGAAAGTAAAAAAAAAAA
AAAAA
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