CX288477
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 4.641e-33 Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = -3 Query: 371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592 +VLELAGNAARDNK NRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK+GKGKG+IGSASQEF Sbjct: 66 EVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32 Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = -3 Query: 371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592 +VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP K+GK KGDIGSASQEF Sbjct: 69 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32 Identity = 69/74 (93.24%), Postives = 71/74 (95.95%), Query Frame = -3 Query: 371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592 +VLELAGNAARDNKK RIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLP K+GK KGDIGSASQEF Sbjct: 69 EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1) HSP 1 Score: 136.732 bits (343), Expect = 1.143e-31 Identity = 68/74 (91.89%), Postives = 71/74 (95.95%), Query Frame = -3 Query: 371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592 +VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLG+VTIANGGVLPNIHQ LLPKK GK KG+IGSASQEF Sbjct: 65 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.651e-30 Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = -3 Query: 371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592 +VLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNIHQTLLPKK GK K DIGSASQEF Sbjct: 65 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1) HSP 1 Score: 132.88 bits (333), Expect = 1.651e-30 Identity = 67/74 (90.54%), Postives = 70/74 (94.59%), Query Frame = -3 Query: 371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592 +VLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNIHQTLLPKK GK K DIGSASQEF Sbjct: 65 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28 Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = -3 Query: 371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592 +VLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNI Q LLPKK G GKGDIGSASQEF Sbjct: 65 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.183e-28 Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = -3 Query: 371 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 592 +VLELAGNAARDNKKNRIVPRHIQLAVRNDEELS+LLG+VTIA GGVLPNI Q LLPKK G GKGDIGSASQEF Sbjct: 65 EVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24 Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = -3 Query: 374 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 592 ++LELAGNAARDNKK+RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GKG ASQE Sbjct: 61 EILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSGKG----DKASQE 129
BLAST of CX288477 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.309e-24 Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = -3 Query: 395 QVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGD 592 +VLELAGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH LLPKK GKG+ Sbjct: 61 EVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGE 126 The following BLAST results are available for this feature:
BLAST of CX288477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 231
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288477 ID=CX288477; Name=CX288477; organism=Citrus clementina; type=EST; length=705bpback to top |