CX288485

Overview
NameCX288485
Unique NameCX288485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_ARATH (Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana GN=TIF3B1 PE=1 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 5.276e-99
Identity = 173/209 (82.78%), Postives = 188/209 (89.95%), Query Frame = 1
Query:   13 IFDVRTGKVMRDFKGSADEFXXXXXXXXXXXSWPVFRWGGGKD-KYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 636
            +FDVRTG++MRDFKGSADEF           SWPVFRW GGKD KYFAKL KN ISVYETE+F+LIDKKS+KV+NV+D  WSPTD I+SLFVPE GGGNQPA+V+LVQIPSK ELRQKNLFSVSDCKMYWQSSG+YLAVKVDRYTKTKKSTY+GFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGD PRPD+SFYSM+
Sbjct:  285 VFDVRTGRMMRDFKGSADEFSIGGPGGVAGASWPVFRWAGGKDDKYFAKLSKNTISVYETETFSLIDKKSMKVDNVVDICWSPTDSILSLFVPEQGGGNQPAKVALVQIPSKVELRQKNLFSVSDCKMYWQSSGEYLAVKVDRYTKTKKSTYSGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDQPRPDVSFYSMK 493          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_TOBAC (Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum GN=TIF3B1 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 2.456e-88
Identity = 164/210 (78.10%), Postives = 177/210 (84.29%), Query Frame = 1
Query:   10 NIFDVRTGKVMRDFKGSADEFXXXXXXXXXXXSWPVFRWGGGK-DKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHG-DSPRPDISFYSM 633
            NI DVRTGKVMRDF+GSADEF           SWPVFRW GGK DKYFA++GKN+ISVYETE+F+LIDKKS+KVENVMDFSWSP DPI++LFVPE G  NQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQS+GDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDN NDKI AF W P+G          +PRPDI FYS+
Sbjct:  288 NISDVRTGKVMRDFQGSADEFAVGGTGGVTGVSWPVFRWSGGKQDKYFARIGKNVISVYETETFSLIDKKSIKVENVMDFSWSPADPILALFVPECG--NQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSNGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNTNDKIPAFGWGPEGSPICCYPSVTTPRPDIRFYSV 495          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_BOMMO (Eukaryotic translation initiation factor 3 subunit B OS=Bombyx mori GN=eIF3-S9 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.541e-49
Identity = 98/215 (45.58%), Postives = 143/215 (66.51%), Query Frame = 1
Query:   13 IFDVRTGKVMRDFKGSADEFXXXXXXXXXXXSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK--------STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSM 633
            I D+RTG+  R F    DE+           +WP+FRW    D++FA++G +++SVYET  F L+DKKS+K+  + DFSWSP+D  ++ +V E    + PARV+L++IP++ E+R KNLFSV+DCK++WQ SGDYL VKVDRY+K KK          Y  FE+F ++E++IP++ +E+    + I AFAWEP G +F++IHGD     ISFY +
Sbjct:  281 IGDIRTGQEKRSFP-PPDEYV----------TWPIFRWSKD-DRFFARIGADVLSVYETPGFGLLDKKSIKIPGIRDFSWSPSDNTLAYWVAE--DKDVPARVTLLEIPNRTEVRSKNLFSVADCKIHWQKSGDYLCVKVDRYSKVKKDKIDIKYSGMYYNFEIFHMREKEIPVDSVEI---KEPIQAFAWEPVGSKFSIIHGDPANISISFYQV 478          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_BOVIN (Eukaryotic translation initiation factor 3 subunit B OS=Bos taurus GN=EIF3B PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.245e-48
Identity = 92/208 (44.23%), Postives = 140/208 (67.31%), Query Frame = 1
Query:   13 IFDVRTGKVMRDFKGSADEFXXXXXXXXXXXSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 636
            I+D+ TG+  R F   +               WP+F+W     K+FA++  + +S+YET S  L+DKKSLK+  + DFSWSP   II+ +VPE    + PARV+L+Q+P+++E+R +NLF+V DCK++WQ +GDYL VKVDR  K  +   T FE+FR++E+ +P++V+E+    + IIAFAWEP G +FAV+HG++PR  +SFY ++
Sbjct:  378 IWDILTGQKKRGFHCESSAH------------WPIFKWSHD-GKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPE--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEM---KETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVK 567          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_RAT (Eukaryotic translation initiation factor 3 subunit B OS=Rattus norvegicus GN=Eif3b PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.536e-48
Identity = 92/208 (44.23%), Postives = 139/208 (66.83%), Query Frame = 1
Query:   13 IFDVRTGKVMRDFKGSADEFXXXXXXXXXXXSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 636
            I+D+ TG   R F   +               WP+F+W     K+FA++  + +S+YET S  L+DKKSLK+  + DFSWSP   II+ +VPE    + PARV+L+Q+P+++E+R +NLF+V DCK++WQ +GDYL VKVDR  K  +   T FE+FR++E+ +P++V+E+    + IIAFAWEP G +FAV+HG++PR  +SFY ++
Sbjct:  389 IWDILTGHKKRGFHCESSAH------------WPIFKWSHD-GKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPE--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEM---KETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVK 578          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_MOUSE (Eukaryotic translation initiation factor 3 subunit B OS=Mus musculus GN=Eif3b PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.536e-48
Identity = 92/208 (44.23%), Postives = 139/208 (66.83%), Query Frame = 1
Query:   13 IFDVRTGKVMRDFKGSADEFXXXXXXXXXXXSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 636
            I+D+ TG   R F   +               WP+F+W     K+FA++  + +S+YET S  L+DKKSLK+  + DFSWSP   II+ +VPE    + PARV+L+Q+P+++E+R +NLF+V DCK++WQ +GDYL VKVDR  K  +   T FE+FR++E+ +P++V+E+    + IIAFAWEP G +FAV+HG++PR  +SFY ++
Sbjct:  395 IWDILTGHKKRGFHCESSAH------------WPIFKWSHD-GKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPE--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEM---KETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVK 584          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_HUMAN (Eukaryotic translation initiation factor 3 subunit B OS=Homo sapiens GN=EIF3B PE=1 SV=3)

HSP 1 Score: 190.66 bits (483), Expect = 5.536e-48
Identity = 92/208 (44.23%), Postives = 139/208 (66.83%), Query Frame = 1
Query:   13 IFDVRTGKVMRDFKGSADEFXXXXXXXXXXXSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 636
            I+D+ TG   R F   +               WP+F+W     K+FA++  + +S+YET S  L+DKKSLK+  + DFSWSP   II+ +VPE    + PARV+L+Q+P+++E+R +NLF+V DCK++WQ +GDYL VKVDR  K  +   T FE+FR++E+ +P++V+E+    + IIAFAWEP G +FAV+HG++PR  +SFY ++
Sbjct:  406 IWDILTGHKKRGFHCESSAH------------WPIFKWSHD-GKFFARMTLDTLSIYETPSMGLLDKKSLKISGIKDFSWSPGGNIIAFWVPE--DKDIPARVTLMQLPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGVVTNFEIFRMREKQVPVDVVEM---KETIIAFAWEPNGSKFAVLHGEAPRISVSFYHVK 595          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_AEDAE (Eukaryotic translation initiation factor 3 subunit B OS=Aedes aegypti GN=eIF3-S9 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.233e-47
Identity = 98/218 (44.95%), Postives = 139/218 (63.76%), Query Frame = 1
Query:   13 IFDVRTGKVMRDFKGSADEFXXXXXXXXXXXSWPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKK----------STYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 636
            I+D+RTG   R F                  +  +FRW    DKY A++G N I VYET +F L+DKKS+KV+ + +FSWSPTD II+ ++ E      PARV+L++IP K E+R KNLF+V+DCK++WQ SGDYL VKVDRY+K+KK            +  FE+F ++E+DIP++ +E+    + I+AFAWEP G +FA+IHGD    ++SFY  +
Sbjct:  276 IWDIRTGTEKRSFISDGTS------------NMSMFRWSHD-DKYVARMGDNAIHVYETSTFYLLDKKSIKVQGIRNFSWSPTDNIIAYWMSE--DLEAPARVTLLEIPRKNEIRNKNLFNVADCKIHWQKSGDYLCVKVDRYSKSKKDKKDADVKFLGMFYNFEIFHMREKDIPVDSVEV---KETILAFAWEPVGSKFAIIHGDPASANVSFYEAK 475          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_XENLA (Eukaryotic translation initiation factor 3 subunit B OS=Xenopus laevis GN=eif3b PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.611e-47
Identity = 87/176 (49.43%), Postives = 129/176 (73.30%), Query Frame = 1
Query:  109 WPVFRWGGGKDKYFAKLGKNMISVYETESFTLIDKKSLKVENVMDFSWSPTDPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVIHGDSPRPDISFYSMR 636
            WP+F+W     K+FA++  + +S+YET S  L+DKKSLK+  + DFSWSP   II+ +VPE    + PARV+L+Q+P+++E+R +NLF+V DCK++WQ +GDYL VKVDR  K  +   T FE+FR++E+ +P++V+E+    D IIAFAWEP G +FAV+HG+ PR  +SFY ++
Sbjct:  302 WPIFKWSHD-GKFFARMTLDTLSIYETPSMGLLDKKSLKITGIKDFSWSPGGNIIAFWVPE--DKDIPARVTLMQMPTRQEIRVRNLFNVVDCKLHWQKNGDYLCVKVDRTPKGTQGMVTNFEIFRMREKQVPVDVVEM---KDGIIAFAWEPNGSKFAVLHGEVPRISVSFYHVK 471          
BLAST of CX288485 vs. ExPASy Swiss-Prot
Match: EIF3B_SCHPO (Eukaryotic translation initiation factor 3 subunit B OS=Schizosaccharomyces pombe GN=SPAC25G10.08 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.104e-47
Identity = 99/228 (43.42%), Postives = 146/228 (64.04%), Query Frame = 1
Query:   13 IFDVRTGKVMRDFK------GSADEFXXXXXXXXXXXSWPVFRWGGGKDKYFAKLGKNM-ISVYETESFTLIDKKSLKVENVMDFSWSPT---------DPIISLFVPELGGGNQPARVSLVQIPSKEELRQKNLFSVSDCKMYWQSSGDYLAVKVDRYTKTKKSTYTGFELFRIKERDIPIEVLELDNKNDKIIAFAWEPKGHRFAVI-------HGDSPRPDISFY 627
            ++D+ +G+++R FK      GS D              WP+F+W    DKY A++     ISVYET S  L+DKK++K++ V +F W P          + +++ + PE+   NQPARV+L+ IPSK  +R KNLF+VSDCK+YWQS+GDYL VKVDR+TKTKKST++  E+FRI+E++IP+EV++L    D ++ FAWEPK  RFA+I       +  + + ++SFY
Sbjct:  281 VWDIASGRILRSFKIPPQPEGSKD---------GKKVIWPIFKWSAD-DKYLARVTVGQSISVYETPSLALVDKKTIKIDGVQNFEWCPVSDALGRDSKEQLLAYWTPEIT--NQPARVALISIPSKSTIRTKNLFNVSDCKLYWQSNGDYLCVKVDRHTKTKKSTFSNLEIFRIREKNIPVEVVDL---KDVVLNFAWEPKSDRFAIISANDQVLNSTNVKTNLSFY 493          
The following BLAST results are available for this feature:
BLAST of CX288485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3B_ARATH5.276e-9982.78Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_TOBAC2.456e-8878.10Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_BOMMO8.541e-4945.58Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_BOVIN3.245e-4844.23Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_RAT5.536e-4844.23Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_MOUSE5.536e-4844.23Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_HUMAN5.536e-4844.23Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_AEDAE1.233e-4744.95Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_XENLA1.611e-4749.43Eukaryotic translation initiation factor 3 subunit... [more]
EIF3B_SCHPO2.104e-4743.42Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC01020H11SK Veg1 Citrus clementina cDNA clone C01020H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288485 ID=CX288485; Name=CX288485; organism=Citrus clementina; type=EST; length=638bp
GGTTGTGATAATATCTTTGATGTGAGAACGGGAAAAGTGATGAGAGATTT
TAAAGGAAGTGCTGATGAGTTTGCAGTTGGAGGAACTGGGGGTGTTGCAG
GAGTATCTTGGCCTGTTTTCAGATGGGGAGGCGGAAAAGATAAGTACTTT
GCCAAACTTGGGAAAAATATGATCTCGGTCTATGAAACTGAGTCCTTTAC
CCTTATTGACAAGAAATCCTTGAAGGTCGAGAATGTTATGGACTTCAGTT
GGTCACCAACTGATCCTATCATTTCACTTTTTGTTCCTGAGCTTGGTGGT
GGGAACCAGCCTGCTAGGGTGAGTCTTGTTCAAATTCCTAGTAAAGAGGA
GTTGAGGCAGAAAAATCTTTTCAGTGTTAGTGATTGTAAGATGTACTGGC
AAAGCAGTGGAGACTATCTAGCTGTTAAAGTCGATCGCTATACAAAAACA
AAAAAAAGCACGTACACCGGCTTTGAGCTGTTCCGAATTAAAGAAAGGGA
CATTCCAATTGAGGTTTTGGAGCTTGACAACAAAAATGACAAGATCATTG
CCTTTGCTTGGGAGCCGAAGGGCCATAGGTTTGCTGTTATCCACGGCGAC
AGTCCAAGGCCTGATATTAGTTTTTACTCAATGCGAAC
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