CX288497

Overview
NameCX288497
Unique NameCX288497
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length575
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig129 contig Ccv1_Contig129:1..575. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.397e-56
Identity = 106/138 (76.81%), Postives = 120/138 (86.96%), Query Frame = 2
Query:    2 KNSLATS-SKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 412
            KN++A+S SKN DEVDGK G   L VKVSMDGAPYLRKVDL+ Y+ YQ+LSSALEKMFSCFT+GQ G HGA GRE +SE KLKDLLHGSEFVLTYEDKDGDWMLVGDVPWE+F  TC++L+IMK +D+IGLAP AVEK
Sbjct:  177 KNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEK 314          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.756e-55
Identity = 104/139 (74.82%), Postives = 123/139 (88.49%), Query Frame = 2
Query:    2 KNSLATSSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGL--APRAVEK 412
            KN+LAT+ KN+DEVDG+ GS AL VKVSMDGAPYLRKVDL++Y+ Y ELSSALEKMF+ FT+GQ GS+GA G++MLSE+KLKDLL+G ++VLTYEDKDGDWMLVGDVPWEMFI  CK+L+IMK  DAIGL  APRA+EK
Sbjct:  195 KNTLATTCKNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEK 333          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.633e-50
Identity = 100/147 (68.03%), Postives = 118/147 (80.27%), Query Frame = 2
Query:    2 KNSLATSSK----NN---DEVDGKAGSS--ALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKC 415
            KNS+A+S      NN   +E + K+G     L VKVSM+GAPYLRK+DLK Y  Y ELSSALEKMFSCFTIGQ+GSHG  GR+ L+ES+L DLL GSE+V+TYEDKD DWMLVGDVPWEMFI +CK+LRIMKS++AIGLAPR +EKC
Sbjct:  155 KNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKC 301          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.162e-46
Identity = 98/145 (67.59%), Postives = 112/145 (77.24%), Query Frame = 2
Query:    2 KNSLATSS-KNNDEVDG---KAGS---SALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKC 415
            KN LA  + K  D  DG   K+G+   +A  VKVSMDGAPYLRKVDLK Y  Y ELS ALEKMFS FTIG  GSHG  G   ++ESK+ DLL+GSE+V TYEDKDGDWMLVGDVPWEMF+ +CKRLRIMK ++AIGLAPRA+EKC
Sbjct:  132 KNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGVNG---MNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKC 273          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.749e-44
Identity = 87/146 (59.59%), Postives = 112/146 (76.71%), Query Frame = 2
Query:    2 KNSLATSSKNNDEVDGKAGSSA--------LLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEKC 415
            K +   +++ ND+  G +G+++          VKVSMDGAPYLRK+DLK Y  YQ+LS+AL KMFS FTIG YG  G   ++ ++ESKL DLL+GS++V TYEDKDGDWMLVGDVPWEMF+ +CKR+RIMK ++AIGLAPRA+EKC
Sbjct:   89 KPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKC 232          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.298e-43
Identity = 88/142 (61.97%), Postives = 105/142 (73.94%), Query Frame = 2
Query:    2 KNSLATSS-----KNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 412
            KN++A S      K++ E      S  L VKVSMDGAPYLRKVDLK Y  Y+ELS ALEKMFSCFT+G   S+G  GR+ LS+ +L DL +G+E VLTYEDKD DWMLVGDVPW MF  +C+RLRIMK +DA+GLAPRA +K
Sbjct:  120 KNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDK 261          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.792e-42
Identity = 86/133 (64.66%), Postives = 106/133 (79.70%), Query Frame = 2
Query:   14 ATSSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 412
            A+S K  +   G AG+   LVKVSMDGAPYLRKVDLK Y  YQ+LS AL KMFS FT+G YG+ G +  + ++ESKL +LL+ SE+V +YEDKDGDWMLVGDVPWEMF+ +CKRLRIMK ++A+GLAPRA+EK
Sbjct:  109 ASSEKAGNFGGGAAGAG--LVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMI--DFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEK 237          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 1.386e-41
Identity = 83/138 (60.14%), Postives = 104/138 (75.36%), Query Frame = 2
Query:    2 KNSLATSSKNN-DEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 412
            KN +A       +E     G +   VKVSMDGAPYLRKVDLK Y+ Y++LS AL KMFS FT+G YG+ G +  + ++ESK+ DLL+ SE+V +YEDKDGDWMLVGDVPW MF+ +CKRLRIMK ++AIGLAPRA+EK
Sbjct:   88 KNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMI--DFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEK 223          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.173e-40
Identity = 85/140 (60.71%), Postives = 102/140 (72.86%), Query Frame = 2
Query:    2 KNSLATSSKNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAI--GLAPRAVEKC 415
            KN LA      +E +  +  +A  VKVSMDGAPYLRKVDLK Y  Y+ELS +L KMFS FT G   S G   ++ ++ESKL DLL+ S++V TYEDKDGDWMLVGDVPWEMF+ +CKRLRIMK  +AI  GLAPRA+ KC
Sbjct:  102 KNMLAVQKSVGEESEKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGM--KDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKC 239          
BLAST of CX288497 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.773e-39
Identity = 78/138 (56.52%), Postives = 100/138 (72.46%), Query Frame = 2
Query:    2 KNSLATSS-KNNDEVDGKAGSSALLVKVSMDGAPYLRKVDLKNYSKYQELSSALEKMFSCFTIGQYGSHGALGREMLSESKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEMFIGTCKRLRIMKSTDAIGLAPRAVEK 412
            KN+LA S+ K   E  GK+      VKVSMDGAPYLRKVDLK YS Y++LS ALEKMFSCF  G+  SH    R+ L++    D L   E+VLTYEDKD DWMLVGD+PW++F  +C++LRIM+ +DA G+APR++E+
Sbjct:  139 KNTLAASATKTKGEDQGKSEVGCCYVKVSMDGAPYLRKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGMAPRSLEQ 276          
The following BLAST results are available for this feature:
BLAST of CX288497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
IAA8_ARATH3.397e-5676.81Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA9_ARATH3.756e-5574.82Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA27_ARATH1.633e-5068.03Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA30_ORYSJ4.162e-4667.59Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA16_ARATH1.749e-4459.59Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA21_ORYSJ3.298e-4361.97Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]
IAA7_ARATH2.792e-4264.66Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA14_ARATH1.386e-4160.14Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
AUX28_SOYBN1.173e-4060.71Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]
IAA19_ORYSJ3.773e-3956.52Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC02001A12SK IF1 Citrus clementina cDNA clone C02001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288497 ID=CX288497; Name=CX288497; organism=Citrus clementina; type=EST; length=575bp
GAAGAATTCATTGGCCACTTCGTCTAAGAATAATGATGAAGTAGATGGAA
AAGCAGGTTCCAGTGCTCTGCTTGTTAAGGTCAGCATGGATGGTGCTCCT
TATTTAAGAAAAGTGGACTTGAAAAATTACTCTAAATATCAGGAACTATC
TTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACAATTGGGCAATATGGAT
CTCATGGGGCTCTGGGCAGGGAGATGCTGAGTGAAAGCAAGTTGAAGGAT
CTGCTACATGGCTCAGAATTCGTTCTCACTTATGAAGACAAAGATGGGGA
TTGGATGCTTGTGGGTGATGTCCCCTGGGAGATGTTTATTGGTACATGCA
AGAGGTTGAGGATTATGAAGAGCACTGATGCCATTGGCCTAGCGCCAAGG
GCTGTGGAGAAATGCAGGAACAGAAACTAGCTACTGTTCAACATATTGTT
GGTATTCATCCAGCAATTCTCGGTGATAAAATTCTGGCAGATGACAGAAA
ATAACATGATCCAAATTCATGCTTGGGGGTGTTGGAGGGCATCTGCTTTT
CTGTGTTACCACATTACTACGTTTA
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