CX288501

Overview
NameCX288501
Unique NameCX288501
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length543
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9449 contig Ccv1_Contig9449:40..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288501 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.953e-27
Identity = 80/167 (47.90%), Postives = 94/167 (56.29%), Query Frame = 1
Query:   49 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALG 543
            MAQ MLLM  GVST++  +LKR++L+  Q Q ++PK   S+L F+PL +                                  + K KVED            K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP           GAIGALG
Sbjct:    1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALG 159          

HSP 2 Score: 71.2478 bits (173), Expect = 3.504e-12
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1
Query:  352 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 489
            K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP
Sbjct:  200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEP 245          
BLAST of CX288501 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.763e-23
Identity = 73/164 (44.51%), Postives = 80/164 (48.78%), Query Frame = 1
Query:   49 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGAL 540
            MAQTMLL +           ++SLV    + L+PKP S      L  +                   F             + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGAL
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGAL 157          

HSP 2 Score: 67.0106 bits (162), Expect = 6.609e-11
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1
Query:  352 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 489
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP
Sbjct:  201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 246          
BLAST of CX288501 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.677e-22
Identity = 75/167 (44.91%), Postives = 81/167 (48.50%), Query Frame = 1
Query:   49 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALG 543
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALG
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALG 160          

HSP 2 Score: 67.0106 bits (162), Expect = 6.609e-11
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1
Query:  352 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 489
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 248          
BLAST of CX288501 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.677e-22
Identity = 75/167 (44.91%), Postives = 81/167 (48.50%), Query Frame = 1
Query:   49 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALG 543
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALG
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALG 160          

HSP 2 Score: 67.0106 bits (162), Expect = 6.609e-11
Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1
Query:  352 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 489
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 248          
BLAST of CX288501 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.394e-21
Identity = 55/82 (67.07%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  298 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALG 543
            K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP           GAIGALG
Sbjct:   69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALG 150          

HSP 2 Score: 68.1662 bits (165), Expect = 2.967e-11
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1
Query:  352 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 489
            K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP
Sbjct:  191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEP 236          
The following BLAST results are available for this feature:
BLAST of CX288501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_SPIOL2.953e-2747.90Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_TOBAC5.763e-2344.51Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SOLSG1.677e-2244.91Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SOLLC1.677e-2244.91Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_ARATH5.394e-2167.07Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02001B05SK IF1 Citrus clementina cDNA clone C02001B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288501 ID=CX288501; Name=CX288501; organism=Citrus clementina; type=EST; length=543bp
GCTGGCTTGAGAAATCTAGCAGAGTGACAACATATTCATTCAATATTAAT
GGCTCAAACTATGCTGCTCATGTCTGGGGTTTCCACTAGCCACGCAGGAA
ACTTGAAAAGAGACTCTTTAGTCACATTTCAAACGCAGATGCTGAGACCT
AAGCCATTCTCTCATCTTATGTTCAACCCACTCTCTAATGAATCTTTAAC
TGCTGCTGCGGCTTCTTCATCATCTAAAGCTTTTTCTACTGTTGCCCTCT
TCAAATCTAAAACCAAAGCTCCACCCAAGACCAAGAAGGTTGAATCAAAG
CCAAAAGTTGAGGATGGTATCTTTGGGACCTCTGGAGGATTTGGTTTTAC
AAAGCAAAATGAGCTCTTTGTTGGTCGTGTTGCCATGATTGGCTTTGCTG
CTTCCTTGTTGGGTGAGGGAATAACTGGGAAGGGGATTCTAGCTCAGTTG
AATTTAGAGACCGGAATTCCAATCTATGAAGCAGAGCCACTGCTTTTATT
TTTCATCTTGTTCACCTTGCTTGGAGCAATTGGAGCTTTGGGT
back to top