CX288501
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288501 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 2.953e-27 Identity = 80/167 (47.90%), Postives = 94/167 (56.29%), Query Frame = 1 Query: 49 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALG 543 MAQ MLLM GVST++ +LKR++L+ Q Q ++PK S+L F+PL + + K KVED K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP GAIGALG Sbjct: 1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALG 159 HSP 2 Score: 71.2478 bits (173), Expect = 3.504e-12 Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1 Query: 352 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 489 K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP Sbjct: 200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEP 245
BLAST of CX288501 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 5.763e-23 Identity = 73/164 (44.51%), Postives = 80/164 (48.78%), Query Frame = 1 Query: 49 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGAL 540 MAQTMLL + ++SLV + L+PKP S L + F + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGAL Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGAL 157 HSP 2 Score: 67.0106 bits (162), Expect = 6.609e-11 Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 Query: 352 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 489 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP Sbjct: 201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 246
BLAST of CX288501 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.677e-22 Identity = 75/167 (44.91%), Postives = 81/167 (48.50%), Query Frame = 1 Query: 49 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALG 543 MAQTMLL + ++SLV + L+PKP S L PL + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGALG Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALG 160 HSP 2 Score: 67.0106 bits (162), Expect = 6.609e-11 Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 Query: 352 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 489 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 248
BLAST of CX288501 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 1.677e-22 Identity = 75/167 (44.91%), Postives = 81/167 (48.50%), Query Frame = 1 Query: 49 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALG 543 MAQTMLL + ++SLV + L+PKP S L PL + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGALG Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALG 160 HSP 2 Score: 67.0106 bits (162), Expect = 6.609e-11 Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1 Query: 352 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 489 K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP Sbjct: 203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEP 248
BLAST of CX288501 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 5.394e-21 Identity = 55/82 (67.07%), Postives = 56/82 (68.29%), Query Frame = 1 Query: 298 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALG 543 K KVED K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP GAIGALG Sbjct: 69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALG 150 HSP 2 Score: 68.1662 bits (165), Expect = 2.967e-11 Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1 Query: 352 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 489 K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEP 236 The following BLAST results are available for this feature:
BLAST of CX288501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288501 ID=CX288501; Name=CX288501; organism=Citrus clementina; type=EST; length=543bpback to top |