CX288520
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288520 vs. ExPASy Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 7.506e-37 Identity = 80/177 (45.20%), Postives = 116/177 (65.54%), Query Frame = -2 Query: 27 FFLVYVDDLILTGNNGNFLSKFVHLLVKKFSIKDLGHLHYFLGIEVIPTTTGLFLSQHKYICDLLSKTNMCGDKPVSTPLCSTASLKLFDGAASAY---ATEYRKVVGALQYLSFTRPDISFAVNKLSQFMHSPSVLHWQAVKRVLRYLKSTNSYGLFLK*NSPCLLHAYSDADWGG 548 + L+YVDD++LTG++ L+ + L FS+KDLG +HYFLGI++ +GLFLSQ KY +L+ M KP+STPL LKL ++A +++R +VGALQYL+ TRPDIS+AVN + Q MH P++ + +KRVLRY+K T +GL++ NS + A+ D+DW G Sbjct: 2 YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPL----PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAG 174
BLAST of CX288520 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.918e-24 Identity = 69/182 (37.91%), Postives = 99/182 (54.40%), Query Frame = -2 Query: 24 LVYVDDLILTGNNGNFLSKFVHLLVKKFSIKDLGHLHYFLGIEVIPTTTG--LFLSQHKYICDLLSKTNMCGDKPVSTPLCSTASLK------LFDGAASAYATEYRKVVGALQY-LSFTRPDISFAVNKLSQFMHSPSVLHWQAVKRVLRYLKSTNSYGLFLK*NSPCLLHAYSDADWGGD 542 L+YVDD+++ G + ++K L K F +KDLG LG++++ T L+LSQ KYI +L + NM KPVSTPL L + + Y VG+L Y + TRPDI+ AV +S+F+ +P HW+AVK +LRYL+ T L + P +L Y+DAD GD Sbjct: 1006 LLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDP-ILKGYTDADMAGD 1186
BLAST of CX288520 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3) HSP 1 Score: 105.145 bits (261), Expect = 2.344e-22 Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = -2 Query: 21 FFLVYVDDLILTGNNGNFLSKFVHLLVKKFSIKDLGHLHYFLGIEVIPTTTGLFLSQHKYICDLLSKTNMCGDKPVSTPLCSTASLKLFDGAASAYATEYRKVVGALQYLSF-TRPDISFAVNKLSQFMHSPSVLHWQAVKRVLRYLKSTNSYGLFLK*NSPC--LLHAYSDADWGGDE 548 + L+YVDD+++ + ++ F L++KF + DL + +F+GI + ++LSQ Y+ +LSK NM VSTPL S + +L + T R ++G L Y+ TRPD++ AVN LS++ + WQ +KRVLRYLK T L K N + Y D+DW G E Sbjct: 1083 YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDC-NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSE 1260
BLAST of CX288520 vs. ExPASy Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.089e-19 Identity = 60/175 (34.29%), Postives = 92/175 (52.57%), Query Frame = -2 Query: 30 FFLVYVDDLILTGNNGNFLSKFVHLLVKKFSIKDLGHLHYFLGIEVIPTTTG-LFLSQHKYICDLLSKTNMCGDKPVSTPLCSTASLKLFDGAASAYATEYRKVVGALQYLSFT-RPDISFAVNKLSQFMHSPSVLHWQAVKRVLRYLKSTNSYGLFLK*NSPCLLHAYSDADWG 548 + VYVDDL++ + + L K +S+KDLG + FLG+ + ++ G + LS YI S++ + K TPLC++ L T Y+ +VG L + + T RPDIS+ V+ LS+F+ P +H ++ +RVLRYL +T S L + S L Y DA G Sbjct: 83 YIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQLALTVYCDASHG 257 The following BLAST results are available for this feature:
BLAST of CX288520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288520 ID=CX288520; Name=CX288520; organism=Citrus clementina; type=EST; length=561bpback to top |