CX288520

Overview
NameCX288520
Unique NameCX288520
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length561
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288520 vs. ExPASy Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.506e-37
Identity = 80/177 (45.20%), Postives = 116/177 (65.54%), Query Frame = -2
Query:   27 FFLVYVDDLILTGNNGNFLSKFVHLLVKKFSIKDLGHLHYFLGIEVIPTTTGLFLSQHKYICDLLSKTNMCGDKPVSTPLCSTASLKLFDGAASAY---ATEYRKVVGALQYLSFTRPDISFAVNKLSQFMHSPSVLHWQAVKRVLRYLKSTNSYGLFLK*NSPCLLHAYSDADWGG 548
            + L+YVDD++LTG++   L+  +  L   FS+KDLG +HYFLGI++    +GLFLSQ KY   +L+   M   KP+STPL     LKL    ++A     +++R +VGALQYL+ TRPDIS+AVN + Q MH P++  +  +KRVLRY+K T  +GL++  NS   + A+ D+DW G
Sbjct:    2 YLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPL----PLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAG 174          
BLAST of CX288520 vs. ExPASy Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.918e-24
Identity = 69/182 (37.91%), Postives = 99/182 (54.40%), Query Frame = -2
Query:   24 LVYVDDLILTGNNGNFLSKFVHLLVKKFSIKDLGHLHYFLGIEVIPTTTG--LFLSQHKYICDLLSKTNMCGDKPVSTPLCSTASLK------LFDGAASAYATEYRKVVGALQY-LSFTRPDISFAVNKLSQFMHSPSVLHWQAVKRVLRYLKSTNSYGLFLK*NSPCLLHAYSDADWGGD 542
            L+YVDD+++ G +   ++K    L K F +KDLG     LG++++   T   L+LSQ KYI  +L + NM   KPVSTPL     L         +   +     Y   VG+L Y +  TRPDI+ AV  +S+F+ +P   HW+AVK +LRYL+ T    L    + P +L  Y+DAD  GD
Sbjct: 1006 LLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDP-ILKGYTDADMAGD 1186          
BLAST of CX288520 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 2.344e-22
Identity = 64/179 (35.75%), Postives = 97/179 (54.19%), Query Frame = -2
Query:   21 FFLVYVDDLILTGNNGNFLSKFVHLLVKKFSIKDLGHLHYFLGIEVIPTTTGLFLSQHKYICDLLSKTNMCGDKPVSTPLCSTASLKLFDGAASAYATEYRKVVGALQYLSF-TRPDISFAVNKLSQFMHSPSVLHWQAVKRVLRYLKSTNSYGLFLK*NSPC--LLHAYSDADWGGDE 548
            + L+YVDD+++   +   ++ F   L++KF + DL  + +F+GI +      ++LSQ  Y+  +LSK NM     VSTPL S  + +L +       T  R ++G L Y+   TRPD++ AVN LS++    +   WQ +KRVLRYLK T    L  K N      +  Y D+DW G E
Sbjct: 1083 YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDC-NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSE 1260          
BLAST of CX288520 vs. ExPASy Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae GN=TY5A PE=4 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.089e-19
Identity = 60/175 (34.29%), Postives = 92/175 (52.57%), Query Frame = -2
Query:   30 FFLVYVDDLILTGNNGNFLSKFVHLLVKKFSIKDLGHLHYFLGIEVIPTTTG-LFLSQHKYICDLLSKTNMCGDKPVSTPLCSTASLKLFDGAASAYATEYRKVVGALQYLSFT-RPDISFAVNKLSQFMHSPSVLHWQAVKRVLRYLKSTNSYGLFLK*NSPCLLHAYSDADWG 548
            +  VYVDDL++   +     +    L K +S+KDLG +  FLG+ +  ++ G + LS   YI    S++ +   K   TPLC++  L           T Y+ +VG L + + T RPDIS+ V+ LS+F+  P  +H ++ +RVLRYL +T S  L  +  S   L  Y DA  G
Sbjct:   83 YIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKVDKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKYRSGSQLALTVYCDASHG 257          
The following BLAST results are available for this feature:
BLAST of CX288520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
M810_ARATH7.506e-3745.20Uncharacterized mitochondrial protein AtMg00810 OS... [more]
POLX_TOBAC1.918e-2437.91Retrovirus-related Pol polyprotein from transposon... [more]
COPIA_DROME2.344e-2235.75Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
YCH4_YEAST1.089e-1934.29Putative transposon Ty5-1 protein YCL074W OS=Sacch... [more]
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Properties
Property NameValue
Genbank descriptionC02001D01SK IF1 Citrus clementina cDNA clone C02001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288520 ID=CX288520; Name=CX288520; organism=Citrus clementina; type=EST; length=561bp
GCTGATATAGAATACATAGATTCATCCCCACCCCAGTCAGCATCAGAGTA
AGCATGAAGAAGACATGGTGAATTCTATTTAAGAAATAAGCCATAAGAAT
TAGTGCTCTTTAAGTAACGAAGAACACGTTTAACTGCTTGCCAATGAAGA
ACACTCGGGCTATGCATAAATTGTGACAACTTATTAACAGCAAATGAAAT
GTCAGGCCTTGTGAAGGAGAGATATTGAAGAGCACCAACAACTTTCCTGT
ATTCTGTAGCATATGCGGAAGCTGCACCATCAAATAACTTCAACGATGCG
GTGGAACATAAAGGAGTTGACACTGGCTTATCTCCACACATATTAGTTTT
GGAGAGAAGATCACATATATACTTATGTTGTGACAAAAACAGACCAGTAG
TTGTTGGAATGACTTCTATACCCAAAAAGTAATGTAGATGGCCAAGGTCC
TTAATTGAGAATTTCTTTACTAACAAGTGAACAAATTTAGATAGAAAATT
ACCATTGTTGCCAGTGAGGATAAGATCATCAACATAGACCAAAAAGAATG
CAGTGATGCCC
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