CX288521

Overview
NameCX288521
Unique NameCX288521
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length603
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: BRU1_SOYBN (Brassinosteroid-regulated protein BRU1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 1.617e-107
Identity = 179/197 (90.86%), Postives = 191/197 (96.95%), Query Frame = 2
Query:    2 GSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAI 592
            GSFYQDFDLTWG  RAKIFNGGQLLSLSLD+VSGSGF+SK++YLFGRIDMQLKLVAG+SAGTVTAYYLSSQGPTHDEIDFEFLGN+SG PYILHTNIF QGKGNREQQFYLWFDPTRNFHTYS+IWKPQH+IFLVDN PIRVFKNAE LGVPFP+NQPM+IYSSLWNADDWATRGGLVKTDW+KAPFTAYYRNF+AI
Sbjct:   30 GSFYQDFDLTWGGDRAKIFNGGQLLSLSLDKVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGPTHDEIDFEFLGNLSGDPYILHTNIFTQGKGNREQQFYLWFDPTRNFHTYSIIWKPQHIIFLVDNTPIRVFKNAEPLGVPFPKNQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRNFKAI 226          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH16_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 16 OS=Arabidopsis thaliana GN=XTH16 PE=2 SV=2)

HSP 1 Score: 371.318 bits (952), Expect = 2.045e-102
Identity = 165/199 (82.91%), Postives = 189/199 (94.97%), Query Frame = 2
Query:    2 GSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC 598
            GSF ++FDLTWG+ R KIF+GG++LSLSLDRVSGSGF+SK++YLFGRIDMQLKLVAG+SAGTVTAYYLSS+GPTHDEIDFEFLGN +G+PY+LHTN+FAQGKGNREQQFYLWFDPT+NFHTYS++W+PQH+IF+VDN+PIRVF NAE LGVPFP+NQPMKIYSSLWNADDWATRGGLVKTDW+KAPFTAYYR F A  C
Sbjct:   25 GSFNEEFDLTWGEHRGKIFSGGKMLSLSLDRVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSEGPTHDEIDFEFLGNETGKPYVLHTNVFAQGKGNREQQFYLWFDPTKNFHTYSLVWRPQHIIFMVDNVPIRVFNNAEQLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAAC 223          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH15_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 15 OS=Arabidopsis thaliana GN=XTH15 PE=1 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 1.914e-100
Identity = 162/198 (81.82%), Postives = 186/198 (93.94%), Query Frame = 2
Query:    5 SFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC 598
            +F+ +FDLTWGD R KIFNGG +LSLSLD+VSGSGF+SK++YLFGRIDMQLKLVAG+SAGTVTAYYLSSQG THDEIDFEFLGN +G+PY+LHTN+FAQGKG+REQQFYLWFDPT+NFHTYS++W+PQH+IFLVDN+PIRVF NAE LGVPFP++QPM+IYSSLWNADDWATRGGLVKTDW+KAPFTAYYR F A  C
Sbjct:   27 NFFDEFDLTWGDHRGKIFNGGNMLSLSLDQVSGSGFKSKKEYLFGRIDMQLKLVAGNSAGTVTAYYLSSQGATHDEIDFEFLGNETGKPYVLHTNVFAQGKGDREQQFYLWFDPTKNFHTYSIVWRPQHIIFLVDNLPIRVFNNAEKLGVPFPKSQPMRIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAAC 224          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH25_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 25 OS=Arabidopsis thaliana GN=XTH25 PE=2 SV=2)

HSP 1 Score: 320.472 bits (820), Expect = 4.140e-87
Identity = 139/199 (69.85%), Postives = 173/199 (86.93%), Query Frame = 2
Query:    2 GSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC 598
            G+F  +FD+TWGD R K+ N G+LL+LSLDR SGSGFQ+K++YLFG+IDMQLKLV G+SAGTVTAYYL S+G T DEIDFEFLGN++G PY +HTN++ QGKG+REQQF+LWFDPT +FHTYSV+W P H++F+VD+IP+R FKN + +G+ +P+ QPM++YSSLWNAD WATRGGLVKTDW+KAPFTA YRNFRA  C
Sbjct:   28 GTFDTEFDITWGDGRGKVLNNGELLTLSLDRASGSGFQTKKEYLFGKIDMQLKLVPGNSAGTVTAYYLKSKGDTWDEIDFEFLGNLTGDPYTMHTNVYTQGKGDREQQFHLWFDPTADFHTYSVLWNPHHIVFMVDDIPVREFKNLQHMGIQYPKLQPMRLYSSLWNADQWATRGGLVKTDWSKAPFTASYRNFRADAC 226          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH13_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 13 OS=Arabidopsis thaliana GN=XTH13 PE=2 SV=1)

HSP 1 Score: 318.546 bits (815), Expect = 1.573e-86
Identity = 142/199 (71.36%), Postives = 173/199 (86.93%), Query Frame = 2
Query:    2 GSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC 598
            GSFY +FD+TWG+ RA I   GQLL+ +LD++SGSGFQSK++YLFG+IDM++KLVAG+SAGTVTAYYLSS+G T DEIDFEFLGNV+GQPY+LHTN+F  GKGNRE QFYLWFDPT +FHTY+V+W P ++IFLVD IPIRVFKN E+ GV +P++QPMKIYSSLW ADDWAT+GG VKTDWT APF+A Y++F  + C
Sbjct:   24 GSFYDNFDITWGNGRANIVESGQLLTCTLDKISGSGFQSKKEYLFGKIDMKMKLVAGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVLHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYKSFNDVDC 222          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH12_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 12 OS=Arabidopsis thaliana GN=XTH12 PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 4.577e-86
Identity = 142/199 (71.36%), Postives = 170/199 (85.43%), Query Frame = 2
Query:    2 GSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC 598
            GSFY  FD+TWG  RA IF  GQLL+ +LD+ SGSGFQSK++YLFG+IDM++KLV G+SAGTVTAYYLSS+G T DEIDFEFLGNV+GQPY++HTN+F  GKGNRE QFYLWFDPT +FHTY+V+W P ++IFLVD IPIRVFKN E+ GV +P++QPMKIYSSLW ADDWAT+GG VKTDWT APF+A YR+F  + C
Sbjct:   25 GSFYDSFDITWGAGRANIFESGQLLTCTLDKTSGSGFQSKKEYLFGKIDMKIKLVPGNSAGTVTAYYLSSKGETWDEIDFEFLGNVTGQPYVIHTNVFTGGKGNREMQFYLWFDPTADFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYPKSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASYRSFNDVDC 223          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH23_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 23 OS=Arabidopsis thaliana GN=XTH23 PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 2.777e-83
Identity = 140/198 (70.71%), Postives = 164/198 (82.83%), Query Frame = 2
Query:    5 SFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC 598
            +F +D ++TWGD R +I N G LL+LSLD+ SGSGFQSK +YLFG+IDMQ+KLVAG+SAGTVTAYYL S G T DEIDFEFLGN+SG PY LHTN+F QGKG+REQQF LWFDPT +FHTYS++W PQ +IF VD  PIR FKN ES G  FP+NQPM++YSSLWNA++WATRGGLVKTDW+KAPFTA YR F    C
Sbjct:   25 NFQRDVEITWGDGRGQITNNGDLLTLSLDKASGSGFQSKNEYLFGKIDMQIKLVAGNSAGTVTAYYLKSPGSTWDEIDFEFLGNLSGDPYTLHTNVFTQGKGDREQQFKLWFDPTSDFHTYSILWNPQRIIFSVDGTPIREFKNMESQGTLFPKNQPMRMYSSLWNAEEWATRGGLVKTDWSKAPFTASYRGFNEEAC 222          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH24_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 24 OS=Arabidopsis thaliana GN=XTH24 PE=1 SV=2)

HSP 1 Score: 301.212 bits (770), Expect = 2.599e-81
Identity = 135/193 (69.95%), Postives = 163/193 (84.46%), Query Frame = 2
Query:    8 FYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFR 586
            F  D ++ WG+ R KI N GQLL+LSLD+ SGSGFQSK +YLFG+IDMQ+KLV G+SAGTVT +YL S+G T DEIDFEFLGN+SG PY LHTN++ QGKG++EQQF+LWFDPT NFHTYS++W PQ +I  VD+ PIR FKN ESLGV FP+N+PM++Y+SLWNADDWATRGGLVKTDW+KAPF A YRN +
Sbjct:   24 FNTDVNVAWGNGRGKILNNGQLLTLSLDKSSGSGFQSKTEYLFGKIDMQIKLVPGNSAGTVTTFYLKSEGSTWDEIDFEFLGNMSGDPYTLHTNVYTQGKGDKEQQFHLWFDPTANFHTYSILWNPQRIILTVDDTPIREFKNYESLGVLFPKNKPMRMYASLWNADDWATRGGLVKTDWSKAPFMASYRNIK 216          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH22_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 22 OS=Arabidopsis thaliana GN=XTH22 PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 3.395e-81
Identity = 135/198 (68.18%), Postives = 163/198 (82.32%), Query Frame = 2
Query:    5 SFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNFRAIPC 598
            +F +D ++TWGD R +I N G+LL+LSLD+ SGSGFQSK +YLFG++ MQ+KLV G+SAGTVT  YL S G T DEIDFEFLGN SG+PY LHTN++ QGKG++EQQF LWFDPT NFHTY+++W PQ +IF VD  PIR FKN ESLG  FP+N+PM++YSSLWNADDWATRGGLVKTDW+KAPFTA YR F+   C
Sbjct:   22 NFQRDVEITWGDGRGQIKNNGELLTLSLDKSSGSGFQSKNEYLFGKVSMQMKLVPGNSAGTVTTLYLKSPGTTWDEIDFEFLGNSSGEPYTLHTNVYTQGKGDKEQQFKLWFDPTANFHTYTILWNPQRIIFTVDGTPIREFKNMESLGTLFPKNKPMRMYSSLWNADDWATRGGLVKTDWSKAPFTASYRGFQQEAC 219          
BLAST of CX288521 vs. ExPASy Swiss-Prot
Match: XTH14_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 14 OS=Arabidopsis thaliana GN=XTH14 PE=1 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 4.433e-81
Identity = 137/194 (70.62%), Postives = 162/194 (83.51%), Query Frame = 2
Query:    2 GSFYQDFDLTWGDKRAKIFNGGQLLSLSLDRVSGSGFQSKRDYLFGRIDMQLKLVAGDSAGTVTAYYLSSQGPTHDEIDFEFLGNVSGQPYILHTNIFAQGKGNREQQFYLWFDPTRNFHTYSVIWKPQHVIFLVDNIPIRVFKNAESLGVPFPENQPMKIYSSLWNADDWATRGGLVKTDWTKAPFTAYYRNF 583
            G+FY+ FD+TWG+ RA IF  GQLL+ +LD+VSGSGFQSK++YLFG+IDM+LKLVAG+SAGTVTAYYLSS+G   DEIDFEFLGN +G PY +HTN+F  GKG+RE QF LWFDPT +FHTY+V W P ++IFLVD IPIRVFKN E  GV +P+NQPM+IYSSLW ADDWAT GG VK DW+ APF A YRNF
Sbjct:   28 GNFYESFDITWGNGRANIFENGQLLTCTLDKVSGSGFQSKKEYLFGKIDMKLKLVAGNSAGTVTAYYLSSKGTAWDEIDFEFLGNRTGHPYTIHTNVFTGGKGDREMQFRLWFDPTADFHTYTVHWNPVNIIFLVDGIPIRVFKNNEKNGVAYPKNQPMRIYSSLWEADDWATEGGRVKIDWSNAPFKASYRNF 221          
The following BLAST results are available for this feature:
BLAST of CX288521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
BRU1_SOYBN1.617e-10790.86Brassinosteroid-regulated protein BRU1 OS=Glycine ... [more]
XTH16_ARATH2.045e-10282.91Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH15_ARATH1.914e-10081.82Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH25_ARATH4.140e-8769.85Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH13_ARATH1.573e-8671.36Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH12_ARATH4.577e-8671.36Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH23_ARATH2.777e-8370.71Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH24_ARATH2.599e-8169.95Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH22_ARATH3.395e-8168.18Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH14_ARATH4.433e-8170.62Xyloglucan endotransglucosylase/hydrolase protein ... [more]

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Properties
Property NameValue
Genbank descriptionC02001D02SK IF1 Citrus clementina cDNA clone C02001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288521 ID=CX288521; Name=CX288521; organism=Citrus clementina; type=EST; length=603bp
GGGTAGCTTCTATCAAGACTTTGATTTAACATGGGGTGATAAGAGAGCTA
AGATTTTCAATGGCGGCCAACTTCTTTCTCTGTCTCTAGACAGAGTTTCT
GGCTCTGGTTTTCAGTCCAAGAGAGACTACTTATTTGGCAGAATTGATAT
GCAGCTCAAGCTTGTTGCTGGTGACTCTGCTGGCACTGTCACTGCCTACT
ATCTGTCTTCGCAAGGGCCGACTCATGATGAGATTGATTTTGAGTTCTTG
GGAAATGTGAGCGGTCAGCCTTACATTCTTCACACAAATATATTCGCTCA
GGGTAAAGGCAACCGGGAGCAACAATTCTATCTCTGGTTTGATCCCACAA
GAAACTTCCACACTTACTCCGTCATCTGGAAGCCCCAACACGTCATCTTC
TTGGTAGATAACATTCCCATTAGAGTGTTCAAAAATGCTGAATCTCTTGG
AGTTCCCTTCCCTGAAAACCAACCAATGAAGATTTACTCAAGTCTTTGGA
ATGCTGATGACTGGGCTACAAGAGGAGGGTTGGTGAAAACTGACTGGACT
AAGGCTCCTTTCACAGCATATTACCGTAACTTCAGAGCCATTCCCTGTAA
CAA
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